Hi Pernille, The shift doesn't really effect any edits or processing you might be doing on the datasets. But if you want to get rid of it, on the tkmedit tools window, you can select View -> Anatomical Resampling -> Main Volume/Aux volume -> Slice.
Sita. On Fri, 21 Oct 2011, Bruce Fischl wrote: > Hi Pernille > > here's a zoomed image of the subject you sent me. Is this what you see? I > don't see any shift over the brainmask.mgz - it looks pretty accurate to me. > > cheers > Bruce > On Tue, 18 Oct 2011, Pernille Iversen wrote: > >> Hi >> After running several subjects (using trio siemens dicomfiles) with >> recon-all -all -nowmsa, we have observed an apparent shift of >> approximately >> one voxel to the left of the pial surface as compared to the brainmask.mgz >> in the TkMedit coronal view. This was observed in all of our subjects. Do >> you have any explanation for this - are there any corrections we need to >> do >> to avoid this? >> >> Thanks, >> Pernille >> >> >> >> > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
