Re: [Freesurfer] order of fMRI prepro

2015-03-04 Thread Douglas N Greve
My conclusion at the time that I put the stream together (15 or so years ago!) was that there was not a clear case to be made for doing it in either order when using an interleaved acquisition. When using a sequential acq, then it is clear that you do mc first then stc. Given that a strong cas

[Freesurfer] order of fMRI prepro

2015-03-04 Thread Jan Willem Koten
Dear Doug,   I have a small question. What is the reason that FsFast does motion correction first and then slice time correction? Does it really make a lot of difference if you change the order of the preprocessing or is this just some ideological stuff?     P.S.   Excuse me for writing y