Re: [Freesurfer] nu_correct crashing in FreeSurfer v6.0

2019-05-01 Thread Glasser, Matthew
at 12:11 PM To: "freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>" mailto:freesurfer@nmr.mgh.harvard.edu>> Subject: Re: [Freesurfer] nu_correct crashing in FreeSurfer v6.0 External Email - Use Caution Douglas, I've run the recon-all script with images f

Re: [Freesurfer] nu_correct crashing in FreeSurfer v6.0

2019-04-11 Thread Jayasekera, Dinal
Sent: Wednesday, April 10, 2019 5:27:15 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] nu_correct crashing in FreeSurfer v6.0 Have you looked at the images to verify that there are no major problems with it? Can you run it outside of the HCP pipeline to make sure it is not an interaction?

Re: [Freesurfer] nu_correct crashing in FreeSurfer v6.0

2019-04-10 Thread Greve, Douglas N.,Ph.D.
Have you looked at the images to verify that there are no major problems with it? Can you run it outside of the HCP pipeline to make sure it is not an interaction? On 4/8/19 12:52 PM, Jayasekera, Dinal wrote: > > External Email - Use Caution > > Dear all, > > > I have been running versio

[Freesurfer] nu_correct crashing in FreeSurfer v6.0

2019-04-08 Thread Jayasekera, Dinal
External Email - Use Caution Dear all, I have been running version 4 of the HCP Pipelines which now used FreeSurfer 6.0. I get the following error when running recon-all using their FreeSurferPipelineBatch script: nu_evaluate: crashed while running minc_modify_header (termina