Re: [Freesurfer] new version of mri_segstats

2013-11-04 Thread Satrajit Ghosh
thanks doug. cheers, satra On Mon, Nov 4, 2013 at 5:33 PM, Douglas N Greve wrote: > It gives the same results as the 5.3 version. The difference is that it > does not require the ribbon.mgz file to be there in order to run. If you > run recon-all from start to finish, then there is not a proble

Re: [Freesurfer] new version of mri_segstats

2013-11-04 Thread Douglas N Greve
It gives the same results as the 5.3 version. The difference is that it does not require the ribbon.mgz file to be there in order to run. If you run recon-all from start to finish, then there is not a problem. If you run recon-all partially, then it may fail because it runs mri_segstats before

Re: [Freesurfer] new version of mri_segstats

2013-11-04 Thread Satrajit Ghosh
hi doug, could you please highlight the changes - especially if there are any critical bug fixes? and should we rerun the new mri_segstats on our current 5.3 processed data? cheers, satra On Mon, Nov 4, 2013 at 9:26 AM, Douglas Greve wrote: > I've put new versions here: > ftp://surfer.nmr.mgh

Re: [Freesurfer] new version of mri_segstats

2013-11-04 Thread Douglas Greve
I've put new versions here: ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/5.3.0-patch/ doug On 11/4/13 7:09 AM, Matura, Silke wrote: Dear Freesurfer community, we are doing cortical thickness analyses with Freesurfer version 5.3.0 in a Linux environment. In order to do the autorecon

[Freesurfer] new version of mri_segstats

2013-11-04 Thread Matura, Silke
Dear Freesurfer community, we are doing cortical thickness analyses with Freesurfer version 5.3.0 in a Linux environment. In order to do the autorecon-1 and autorecon-2 steps, we need to download the new version of mri_segstats. Unfortunately, the link on the Freesurfer Release Notes Webpage do