thanks doug. cheers,
satra On Mon, Nov 4, 2013 at 5:33 PM, Douglas N Greve <gr...@nmr.mgh.harvard.edu>wrote: > It gives the same results as the 5.3 version. The difference is that it > does not require the ribbon.mgz file to be there in order to run. If you > run recon-all from start to finish, then there is not a problem. If you run > recon-all partially, then it may fail because it runs mri_segstats before > the ribbon.mgz is created. > doug > > > > > On 11/04/2013 09:30 AM, Satrajit Ghosh wrote: > >> hi doug, >> >> could you please highlight the changes - especially if there are any >> critical bug fixes? and should we rerun the new mri_segstats on our current >> 5.3 processed data? >> >> cheers, >> >> satra >> >> On Mon, Nov 4, 2013 at 9:26 AM, Douglas Greve >> <gr...@nmr.mgh.harvard.edu<mailto: >> gr...@nmr.mgh.harvard.edu>> wrote: >> >> I've put new versions here: >> ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/5.3.0-patch/ >> doug >> >> >> >> On 11/4/13 7:09 AM, Matura, Silke wrote: >> >>> >>> Dear Freesurfer community, >>> >>> we are doing cortical thickness analyses with Freesurfer version >>> 5.3.0 in a Linux environment. In order to do the autorecon-1 and >>> autorecon-2 steps, we need to download the new version of >>> mri_segstats. >>> >>> Unfortunately, the link on the Freesurfer Release Notes Webpage >>> does not work. Also, we could not find mri_segstats on the ftp >>> server: >>> /ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/ >>> greve/mri_segstats.centos6/ >>> >>> // >>> >>> >>> Could you tell us, where we can download the new version of >>> mri_segstats? >>> >>> Thank you, >>> >>> Silke >>> >>> Dr. Dipl.-Psych. Silke Matura >>> >>> Department of Psychiatry, Psychosomatic Medicine and Psychotherapy >>> >>> Laboratory of Neurophysiology and Neuroimaging >>> >>> Johann Wolfgang Goethe University of Frankfurt >>> >>> Heinrich-Hoffman-Str. 10 >>> >>> 60528 Frankfurt Germany >>> >>> Tel: 069 6301 7655 >>> >>> email: silke.mat...@kgu.de <mailto:silke.mat...@kgu.de> >>> >>> >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu <mailto:freesur...@nmr.mgh. >>> harvard.edu> >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu >> > >> >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to >> whom it is >> addressed. If you believe this e-mail was sent to you in error and >> the e-mail >> contains patient information, please contact the Partners >> Compliance HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to >> you in error >> but does not contain patient information, please contact the >> sender and properly >> dispose of the e-mail. >> >> >> > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > >
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