Re: [Freesurfer] mris_volmask ERROR

Guang, Without seeing the recon-all logs, I'm not exactly sure what happened but running "recon-all -s" wouldn't have finished running the processing stream so you would be comparing unfinished data to finished data. -- On Tue, 8 Dec 2009, Guang Zeng wrote: > > Hi, there, > > I submit several

[Freesurfer] mris_volmask ERROR

Hi, there, I submit several subjects to FS piepline using our Sun Grid Engine System, all of them failed at the same place which is the mris_volmask step in autorecon3. It gave me an error like: ERROR: In /usr/pubsw/packages/vtk/5.2.0/src/Common/vtkMultiThreader.cxx, line 372 vtkMultiThreade

Re: [Freesurfer] mris_volmask description

Hi Zeng, Here's the wiki for mris_volmask. https://surfer.nmr.mgh.harvard.edu/fswiki/mris%25volmask You can also find a description of it in the terminal window when you type in 'mris_volmask --help' or just mris_volmask. Sita. On Thu, 10 Sep 2009, Guang Zeng wrote: > > Hello, there, > >

[Freesurfer] mris_volmask description

Hello, there, Do you know where I can find a description for mris_volmask. The page on FreeSurferWiki about this is empty. Thanks a lot! Zeng _ Windows Live: Make it easier for your friends to see what you’re up to on Facebook.

Re: [Freesurfer] mris_volmask error

Dahlia, Try again now, I just fixed it. Nick On Fri, 2008-09-12 at 12:21 -0700, Dahlia Sharon wrote: > Hi, > > > > I ran recon-all, and it exited with an error at this command: > > > > mris_volmask --label_left_white 2 --label_left_ribbon 3 -- > label_right_white 41 --label_right_ribbon

[Freesurfer] mris_volmask error

Hi, I ran recon-all, and it exited with an error at this command: mris_volmask --label_left_white 2 --label_left_ribbon 3 --label_right_white 41 --label_right_ribbon 42 --save_ribbon --save_distance subj10 The error message reads: mris_volmask.bin: error while loading shared librar

Re: [Freesurfer] mris_volmask + mris_volume

mris_volume computes the volume of the interior of a surface. Can you tell us what hardware/software platform you are on and we'll give you the binaries you want Bruce On Fri, 17 Aug 2007, Leila BH wrote: Hi again, I need the command mris_volmask that I found in the website but I don't

[Freesurfer] mris_volmask + mris_volume

Hi again, I need the command mris_volmask that I found in the website but I don't have it I my freesurfer (stable3), someone can help me? And how to use mris_volume? I wrote:mris_volume in the surf folder, after small time I can see like an output this number 333731, but I can not find any new

Re: [Freesurfer] mris_volmask

Hi Ipek, do you mean mri_mask? What are you trying to do? And what hardware/software platform are you using? cheers Bruce On Thu, 19 Jul 2007, Ipek Oguz wrote: Hi, Where can I get the mris_volmask tool? I've seen that it was on the ftp server under pub/dist at some point, but it seems to

[Freesurfer] mris_volmask

Hi, Where can I get the mris_volmask tool? I've seen that it was on the ftp server under pub/dist at some point, but it seems to have disappeared. Thanks a lot! -ipek ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harv