Hi, there,
I submit several subjects to FS piepline using our Sun Grid Engine System, all
of them failed at the same place which is
the mris_volmask step in autorecon3. It gave me an error like:
ERROR: In /usr/pubsw/packages/vtk/5.2.0/src/Common/vtkMultiThreader.cxx, line
372
vtkMultiThreader (0x33d05a90): Unable to create a thread. pthread_create()
returned 12
I
knew this error is caused by some VTK function FS used to allocate
memory. So what I did is I use recon-all -s subjectid , and the process will
finish.
What happen is the same subjects have been run on our local machines, and
finished without any problems.
However, when I looked at the wmparc.stats file of the same subject, the
results are quite different.
For example,
ctx_isthumus cingluate and ctx_posterior singulate value are not zeros for my
local machine results, while
ctx_isthumus cingluate and ctx_posterior singulate value are zeros for
my SGE machine results.
And this problem have to all these subjects. Another funny thing is if I look
at the ?h.aparc.stats file, the results from SGE and local machine are the
same, while
when I load the results to tksurfer, they are quite different.
So my question is:
Since I need use SGE to run multiple subjects again, next time when I met this
mris_volmask ERROR, I need rerun the process from the beginning, not from
autorecon3, right?
Thank!
Guang
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