Re: [Freesurfer] mris_register problem: "No such file or directory"

2015-08-12 Thread Fidel Alfaro Almagro
Hi, I've had time to come back to this problem. It was not solved after recreating the sphere. And plus, it happens in 30% of my subjects (Approximately). I have opened the sphere and I can see no problem there (nor there is any kind of error message after opening it. Could you tell me what file

Re: [Freesurfer] mris_register problem: "No such file or directory"

2015-08-02 Thread Bruce Fischl
try opening it in tksurfer and see if it complains On Sun, 2 Aug 2015, Fidel Alfaro Almagro wrote: Hi, Thanks for the quick answer. There was no error message in the previous steps. I started it with : mris_sphere -seed 1234 ../surf/lh.inflated ../surf/lh.sphere Although if the seed is the

Re: [Freesurfer] mris_register problem: "No such file or directory"

2015-08-02 Thread Fidel Alfaro Almagro
Hi, Thanks for the quick answer. There was no error message in the previous steps. I started it with : mris_sphere -seed 1234 ../surf/lh.inflated ../surf/lh.sphere Although if the seed is the same, I am guessing that any non-deterministic process would have the same output. Is there a a way to

Re: [Freesurfer] mris_register problem: "No such file or directory"

2015-08-02 Thread Bruce Fischl
hmm, something seems to be wrong maybe the the ?h.sphere. Can you try recreating it cheers Bruce On Sun, 2 Aug 2015, Fidel Alfaro Almagro wrote: Hi all, I received an error in one of the steps of recon-all. The error is "No such file or directory" at the end of one of the registration processe

[Freesurfer] mris_register problem: "No such file or directory"

2015-08-02 Thread Fidel Alfaro Almagro
Hi all, I received an error in one of the steps of recon-all. The error is "No such file or directory" at the end of one of the registration processes. The step was mris_register -curv. The command was: mris_register -curv ../surf/lh.sphere /average/lh.average.curvature.filled.buckner40.tif ../s