: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Greve, Douglas N.,Ph.D.
Sent: 10 January 2019 00:27
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] mris_apply_reg failing for area/volume
I have found and fixed the problem. You will need a new version of
mris_apply_reg from here
e, Douglas
> N.,Ph.D.
> *Sent:* 07 January 2019 17:42
> *To:* freesurfer@nmr.mgh.harvard.edu
> *Subject:* Re: [Freesurfer] mris_apply_reg failing for area/volume
> What is $SUBJECTS_DIR/${template}/surf/lh.sphere.reg ? If template is not
> fsaverage_sym, can you send this file to me
Subject: Re: [Freesurfer] mris_apply_reg failing for area/volume
What is $SUBJECTS_DIR/${template}/surf/lh.sphere.reg ? If template is not
fsaverage_sym, can you send this file to me too?
On 1/7/19 5:21 AM, James Michael Roe wrote:
External Email - Use Caution
Dear freesurfer experts
urfer support list
Subject: Re: [Freesurfer] mris_apply_reg failing for area/volume
External Email - Use Caution
Hi again Doug
FYI have sent the files as requested
James
From:
freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun..
list
Subject: Re: [Freesurfer] mris_apply_reg failing for area/volume
External Email - Use Caution
Hi again Doug
FYI have sent the files as requested
James
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Greve, Douglas N.,Ph.D.
Sent
Subject: Re: [Freesurfer] mris_apply_reg failing for area/volume
Not sure what is going on. Can you send me the input rh.area file as
well as lh.40tvs8ref_sym_20.sphere.reg and
40tvs8ref_sym_20/surf/lh.sphere.reg? You can post them here
https://gate.nmr.mgh.harvard.edu/filedrop2
When it asks you
gy
> University of Oslo
> PB 1094 Blindern
> 0317 Oslo
> Mobile: 958 49 437
>
>
> From: freesurfer-boun...@nmr.mgh.harvard.edu
> on behalf of Greve, Douglas N.,Ph.D.
>
> Sent: 07 November 2018 19:02
> To: freesurfer@nmr.mgh.harva
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Greve, Douglas N.,Ph.D.
Sent: 07 November 2018 19:02
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] mris_apply_reg failing for area/volume
Can you send the terminal output that includes the error?
On 11/06/2018 06:36 PM
gt; From: James Michael Roe
> Sent: 31 October 2018 19:45
> To: Freesurfer support list
> Subject: Re: [Freesurfer] mris_apply_reg failing for area/volume
>
> Hi Bruce
>
> Can confirm that both files (rh.area & rh.volume) load fine in freeview
>
> Thanks for t
register when using
--jac is still unsolved
Appreciate the support.
Thanks
James
From: James Michael Roe
Sent: 31 October 2018 19:45
To: Freesurfer support list
Subject: Re: [Freesurfer] mris_apply_reg failing for area/volume
Hi Bruce
Can confirm that both
8 15:43
To: Freesurfer support list
Subject: Re: [Freesurfer] mris_apply_reg failing for area/volume
Hi James
can you verify that the various files (e.g.
/cluster/projects/p23/projects/Memory_Project/James/AgeSym/long_recons_FXhemi/010_NDev/1000409_02_10_02_11.long.base_1000409_11/surf/rh.area)
Hi James
can you verify that the various files (e.g.
/cluster/projects/p23/projects/Memory_Project/James/AgeSym/long_recons_FXhemi/010_NDev/1000409_02_10_02_11.long.base_1000409_11/surf/rh.area)
are intact by loading them into freeview? For the area file you will of
course have to load it as
External Email - Use Caution
?
Dear freesurfer experts
I'm running the following commands to register RH area and volume files per sub
to both hemispheres of a symmetrical template following Xhemi routines.
The commands have already worked for many subs, but are failing to wr
not
> part of FS5.3
>
>
>
> Best,
>
> M_
>
>
>
> *From:* freesurfer-boun...@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@
> nmr.mgh.harvard.edu] *On Behalf Of *lanbo Wang
> *Sent:* Friday, November 3, 2017 11:49 AM
> *To:* freesurfer@nmr.mgh.harvard.edu
&g
@nmr.mgh.harvard.edu
Subject: [Freesurfer] mris_apply_reg
Dear Freesurfer experts,
I try run this code according to Xhemi：
mris_apply_reg --src-label label/rh.V1_exvivo.thresh.label --trg
rh-on-lh.V1_exvivo.thresh.label \
--streg xhemi/surf/lh.fsaverage_sym.sphere.reg surf/lh.fsaverage_sym.sphere.reg
However
Hi Lanbo
Doug (who knows the answer to this question) is on vacation. Can you
repost next week?
thanks
Bruce
On Fri, 3 Nov 2017, lanbo Wang wrote:
Dear Freesurfer experts,
I try run this code according to Xhemi：
mris_apply_reg --src-label label/rh.V1_exvivo.thresh.label --trg
rh-on-lh.V1_e
Dear Freesurfer experts,
I try run this code according to Xhemi：
mris_apply_reg --src-label label/rh.V1_exvivo.thresh.label --trg
rh-on-lh.V1_exvivo.thresh.label \
--streg xhemi/surf/lh.fsaverage_sym.sphere.reg surf/lh.fsaverage_sym.sphere.reg
However, error shows: Option --src-label unknown. And
here you go ...
https://gate.nmr.mgh.harvard.edu/safelinks/greve/mris_apply_reg
On 12/9/16 4:01 PM, Matthew Defenderfer wrote:
Hi All,
I am trying to mirror labels across hemispheres and found various
threads using mris_apply_reg. Unfortunately the version of that
command I have does not rec
Hi All,
I am trying to mirror labels across hemispheres and found various threads
using mris_apply_reg. Unfortunately the version of that command I have does
not recognize labels and all of the links in the mailing list seem to be
broken. Would it be possible to get a link to the updated command?
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