Hi James
can you verify that the various files (e.g.
/cluster/projects/p23/projects/Memory_Project/James/AgeSym/long_recons_FXhemi/010_NDev/1000409_02_10_02_11.long.base_1000409_11/surf/rh.area)
are intact by loading them into freeview? For the area file you will of
course have to load it as an overlay not as a surface (since it isn't a
surface)
cheers
Bruce
On Mon, 29 Oct 2018, James Michael Roe wrote:
External Email - Use Caution
Dear freesurfer experts
I’m running the following commands to register RH area and volume files per sub
to both hemispheres
of a symmetrical template following Xhemi routines.
The commands have already worked for many subs, but are failing to write the
target file for a
number of others (and all run fine without the –-jac flag)
#right to left
mris_apply_reg \
--src $SUBJECTS_DIR/$sub/surf/rh.area \
--trg $concatdir/rh.lh.area.${sub}.${template}.nii.gz \
--streg $SUBJECTS_DIR/$sub/xhemi/surf/lh.${template}.sphere.reg
$SUBJECTS_DIR/${template}/surf/lh.sphere.reg \
--jac
#right to right
mris_apply_reg \
--src $SUBJECTS_DIR/$sub/surf/rh.area \
--trg $concatdir/rh.rh.area.${sub}.${template}.nii.gz \
--streg $SUBJECTS_DIR/$sub/surf/rh.${template}.sphere.reg
$SUBJECTS_DIR/${template}/surf/rh.sphere.reg \
--jac
The error is not template-specific as the output is the same using fsaverage_sym
Attached is the log file.
Thanks in advance!
- James
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