RE: [Freesurfer] mris_anatomical_stats on custom annot

2005-12-30 Thread Fornito, Alexander
e University of Melbourne [EMAIL PROTECTED] From: Bruce Fischl [mailto:[EMAIL PROTECTED] Sent: Sat 31/12/2005 12:54 AM To: Fornito, Alexander Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] mris_anatomical_stats on custom annot Hi Alex, did you run mris_c

Re: [Freesurfer] mris_anatomical_stats on custom annot

2005-12-30 Thread Bruce Fischl
Hi Alex, did you run mris_ca_train with -t ? If so, it should embed the color table in the .gcs file, then get probagated to the .annot, so you shouldn't have to specify anything to mris_anatomical_stats. cheers, Bruce On Fri, 30 Dec 2005, Fornito, Alexander wrote: Hi, I'm trying to run m

[Freesurfer] mris_anatomical_stats on custom annot

2005-12-30 Thread Fornito, Alexander
Hi, I'm trying to run mris_anatomical_stats on a custom parcellation, but am having problems because I don't know what the flag to speficy the appropriate colour table is. If I run the -b option, I get output but with no labels. If I run -f, I get a message saying that no colour table is loaded.