ung
Begin forwarded message:
From: Juhyoung Ryu mailto:jh67753...@gmail.com>>
Subject: Re: [Freesurfer] mrisComputeCorrelationTerm: delta is not
finite at vno 0
Date: February 8, 2017 at 11:01:23 AM GMT+9
To: Z K mailto:zkauf...@nmr.mgh.harvard.edu>>
Cc: Bruce Fischl mailto:fis...@
milar
>>> file: RB_all_2016-05-10.vc700.gca
>>> Do you think I should drop that file manually from FREESURFER v5.2?
>>> Thank you in advance,Juhyoung
>>>
>>> Begin forwarded message:
>>> From: Juhyoung Ryu
>>> Subject: Re: [Freesurfer]
r/average/RB_all_2008-03-26.gca.
>>>> That file not exist in ‘average' folder, and there is one similar
>>>> file: RB_all_2016-05-10.vc700.gca
>>>> Do you think I should drop that file manually from FREESURFER v5.2?
>>>> Thank you in advance,Juhyoung
>>>>
>
B_all_2016-05-10.vc700.gca
>>> Do you think I should drop that file manually from FREESURFER v5.2?
>>> Thank you in advance,Juhyoung
>>>
>>> Begin forwarded message:
>>> From: Juhyoung Ryu
>>> Subject: Re: [Freesurfer] mrisComputeCorrelationTerm
le not exist in ‘average' folder, and there is one similar
>> file: RB_all_2016-05-10.vc700.gca
>> Do you think I should drop that file manually from FREESURFER v5.2?
>> Thank you in advance,Juhyoung
>>
>> Begin forwarded message:
>> From: Juhyoung Ryu
Hello Juhyoung,
I noticed from the recon-all.log files that you are using freesurfer
v5.2. It was revealed that this version had issues regarding systematic
white surface contraction and placement of the pial surface extending
too far:
https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2
Hi Juhyoung
this is a pretty odd bug, but I do have a patch for it. What
hardware/software environment are you using?
cheers
Bruce
On Mon, 6 Feb 2017, Juhyoung
Ryu wrote:
Hi FS developers,
I received errors in one of steps in recon-all.
I analyzed 111 individual subjects' T1 data using s
it means:
cd $SUBJECTS_DIR
tar czvf for_bruce.tgz ${subject_id}
cheers
Bruce
On Tue, 7 Feb 2017, Juhyoung Ryu
wrote:
Hi Bruce,
Does 'entire subject directory tree' means that the subject’s data containing
all preprocessed results before i run FREESURFER? not only raw T1 and T2 file?
Than
Hi Bruce,
Does 'entire subject directory tree' means that the subject’s data containing
all preprocessed results before i run FREESURFER? not only raw T1 and T2 file?
Thank you,
Juhyoung.
> On Feb 7, 2017, at 10:36 AM, Bruce Fischl wrote:
>
> Hi Juhyoung
>
> can you tar and gzip the entire
Hi Juhyoung
can you tar and gzip the entire subject directory tree and upload that?
thanks
Bruce
On Tue, 7 Feb 2017, Juhyoung Ryu wrote:
I uploaded 3 set of T1.nii and T2.nii files for 3 example subjects.
You can get subject information here : T1_CUBEE{#subject}.nii
#0001 data success FS pro
I uploaded 3 set of T1.nii and T2.nii files for 3 example subjects.
You can get subject information here : T1_CUBEE{#subject}.nii
#0001 data success FS processing and #0002 / #0010 data is failed.
- Success: 0001
- Failed: 0010, 0002
I did FREESURFER processing using both T1 and T
Hi Juhyoung
can you upload one subject that this happens in to our ftp site?
cheers
Bruce
On Mon, 6
Feb 2017, Juhyoung Ryu wrote:
Hi FS developers,
I received errors in one of steps in recon-all.
I analyzed 111 individual subjects' T1 data using same method, but there are
errors in only 1
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