Hello Juhyoung, I noticed from the recon-all.log files that you are using freesurfer v5.2. It was revealed that this version had issues regarding systematic white surface contraction and placement of the pial surface extending too far:
https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2013-May/029581.html I would recommend processing these subjects with version 6.0 https://surfer.nmr.mgh.harvard.edu/fswiki/DownloadAndInstall -Zeke On 02/06/2017 01:43 AM, Juhyoung Ryu wrote: > > Hi FS developers, > > I received errors in one of steps in recon-all. > I analyzed 111 individual subjects' T1 data using same method, but there > are errors in _only 14 subjects._ > > > > > Below is screenshot image in the end of recon-all.log file. I attached > log files from two exemplar subjects below, also. > > I’d appreciate if you might help me. > Juhyoung. > > > > > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
