Re: [Freesurfer] mri_surfcluster coordinates

2011-07-26 Thread Douglas N Greve
Hi Chris, mri_surfcluster should output coordinates in "Talairach" space (The newer 5.1 version uses MNI305 space). Internally, we always use MNI305 space. To report "Talairach" coordinates, we then apply a transform (http://www.mrc-cbu.cam.ac.uk/Imaging/mnispace.html) to give particular values

[Freesurfer] mri_surfcluster coordinates

2011-07-25 Thread Chris Hyatt
Dear Freesurfers, I know that Qdec outputs coordinates in a "Freesurfer specific space", rather than in Talairach space, per this old thread https://mail.nmr.mgh.harvard.edu/pipermail/freesurfer/2008-November/008878.html However, I found that mri_surfcluster (Freesurfer v5.0) in its summary out