This one has 9mm thick slices. This web page:
https://surfer.nmr.mgh.harvard.edu/fswiki/FreeSurferBeginnersGuide
has some discussion about what types of inputs are needed.
cheers
Bruce
On Mon, 19 Mar 2018, Z Hessam wrote:
hello, i have problem again with a new data set.
this is the recon-al
Your input here is a localizer image:
Protocol t2_haste_localizer_p2
On Mon, Mar 19, 2018 at 12:51 PM, Z Hessam wrote:
>
> hello, i have problem again with a new data set.
> this is the recon-all.log file in attach
>
> thanks a lot
>
>
> On Fri, Feb 9, 2018 at 2:22 PM, Z Hessam wrote
hello, i have problem again with a new data set.
this is the recon-all.log file in attach
thanks a lot
On Fri, Feb 9, 2018 at 2:22 PM, Z Hessam wrote:
> thank you for your attention
>
> regards
>
> On Fri, Feb 9, 2018 at 1:04 AM, Bruce Fischl
> wrote:
>
>> looks like the acquisition is not wh
thank you for your attention
regards
On Fri, Feb 9, 2018 at 1:04 AM, Bruce Fischl
wrote:
> looks like the acquisition is not what you would need to run FreeSurfer
> on. Looking at the log I think your input is a T2-weighted image (we
> require a T1) with a slice thickness of 9mm (we require all
looks like the acquisition is not what you would need to run FreeSurfer
on. Looking at the log I think your input is a T2-weighted image (we
require a T1) with a slice thickness of 9mm (we require all voxel
dimensions to be <=1.5mm or so)
cheers
Bruce
On Thu, 8 Feb 2018, Z Hessam wrote:
s
when i use first code for another data set, it sent me an error:
ERROR: /tmp/hessam91.tmp.decompressed.dcm.PV8Mal is not a dicom file
why this error happens?
On Thu, Feb 8, 2018 at 9:48 PM, Z Hessam wrote:
> sure...
> with first code i convert *.dcm files.
> with second code i want to segment
can you send us the complete command you ran, the entire screen output
and the recon-all.log file?
cheers
Bruce
On Thu, 8 Feb 2018, Z Hessam wrote:
Hello FreeSurfer develpers
I'm attempting to run " recon-all " command on a file of dicom data, and
encounter with an error
command:
recon-all -
Hello FreeSurfer develpers
I'm attempting to run " recon-all " command on a file of dicom data, and
encounter with an error command:
recon-all -s dyegmoh exited with ERRORS at Thu Feb 8 17:08:16 +0330 2018
how can i understand why this error happens and what should i do to solve
it?
__
