hello, i have problem again with a new data set. this is the recon-all.log file in attach
thanks a lot On Fri, Feb 9, 2018 at 2:22 PM, Z Hessam <z.hes...@gmail.com> wrote: > thank you for your attention > > regards > > On Fri, Feb 9, 2018 at 1:04 AM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> > wrote: > >> looks like the acquisition is not what you would need to run FreeSurfer >> on. Looking at the log I think your input is a T2-weighted image (we >> require a T1) with a slice thickness of 9mm (we require all voxel >> dimensions to be <=1.5mm or so) >> >> >> cheers >> Bruce >> >> >> >> On Thu, 8 Feb 2018, Z Hessam wrote: >> >> sure... >>> with first code i convert *.dcm files. >>> with second code i want to segment data: >>> >>> 1) recon-all -i /media/hessam91/driver2/data/1.dcm -autorecon1 -subjid >>> dyegmoh >>> 2) recon-all -s dyegmoh -all >>> >>> and the log file is attached(recon-all_dyegmoh.log). >>> >>> >>> >>> >>> On Thu, Feb 8, 2018 at 7:05 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> >>> wrote: >>> can you send us the complete command you ran, the entire screen >>> output and the >>> recon-all.log file? >>> >>> cheers >>> Bruce >>> On Thu, 8 Feb 2018, Z Hessam wrote: >>> >>> Hello FreeSurfer develpers >>> I'm attempting to run " recon-all " command on a file of >>> dicom data, and >>> encounter with an error >>> command: >>> >>> recon-all -s dyegmoh exited with ERRORS at Thu Feb 8 >>> 17:08:16 +0330 2018 >>> >>> how can i understand why this error happens and what should >>> i do to solve >>> it? >>> >>> >>> >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> The information in this e-mail is intended only for the person to whom >>> it is >>> addressed. If you believe this e-mail was sent to you in error and the >>> e-mail >>> contains patient information, please contact the Partners Compliance >>> HelpLine at >>> http://www.partners.org/complianceline . If the e-mail was sent to you >>> in error >>> but does not contain patient information, please contact the sender and >>> properly >>> dispose of the e-mail. >>> >>> >>> >>> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom it >> is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you >> in error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> >> >
recon-all.log
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