that will show you all the vertices with uncorrected p-values. It will
not show you what the clusters are or what the p-value of the cluster is.
dopug
On 04/25/2013 06:02 PM, Jeni Chen wrote:
> aha! That did the trick. Thanks!
>
> My other question is, since the purpose of running mri_glmfit-sim a
aha! That did the trick. Thanks!
My other question is, since the purpose of running mri_glmfit-sim at
--cwpvalthresh .999 is to see all the clusters, wouldn't it be the same if I
were simply to look at sig.mgh?
Jeni
> The csdbase is mc-z.abs.3
> Try using that
> doug
>
>
On 2013-04-25, at 5
The csdbase is mc-z.abs.3
Try using that
doug
On 04/25/2013 05:55 PM, Jeni Chen wrote:
> Hi Doug,
>
> The very first command line was:
>
> mri_glmfit-sim \
> --glmdir
> /Volumes/RainvilleHD2/Imaging_Data/Thickness/MATHIEUP_IBS/FS_1stAnalysis/GLMFIT/LH_1GroupAvg_ModVAS_nuissanceAGE_DOSS
>
>
Hi Doug,
The very first command line was:
mri_glmfit-sim \
--glmdir
/Volumes/RainvilleHD2/Imaging_Data/Thickness/MATHIEUP_IBS/FS_1stAnalysis/GLMFIT/LH_1GroupAvg_ModVAS_nuissanceAGE_DOSS
\
--sim mc-z 5000 3 mc-z.abs.3 \
--cwpvalthresh .05 \
--sim-sign abs \
--overwrite
I was wondering
Sorry, I mean the first time that you ran it to create the csd files in
the first place
doug
On 04/25/2013 05:30 PM, Jeni Chen wrote:
> The original command line:
> > mri_glmfit-sim \
> > --glmdir GLMFIT/LH_1GroupAvg_ModVAS_nuissanceAGE_DOSS \
> > --cwpvalthresh .999 \
> > --no-sim
> > GLMFIT/
The original command line:
> mri_glmfit-sim \
> --glmdir GLMFIT/LH_1GroupAvg_ModVAS_nuissanceAGE_DOSS \
> --cwpvalthresh .999 \
> --no-sim
> GLMFIT/LH_1GroupAvg_ModVAS_nuissanceAGE_DOSS/csd/mc-z.abs.3.j001-1GroupAvg-Cor-thickness-Mod-VAS.csd
To which you suggested
> mri_glmfit-sim \
> --glmdir G
what was your orignal mri_glmfit-sim command line?
On 04/25/2013 05:17 PM, Jeni Chen wrote:
> Hi Doug,
>
> Sorry; didn't realize it wasn't included.
>
> So to state the original problem, I tried running mri_glmfit-sim with
> the following options (previous message included below):
>
> mri_glmfit-
Hi Doug,Sorry; didn't realize it wasn't included.So to state the original problem, I tried running mri_glmfit-sim with the following options (previous message included below):mri_glmfit-sim \--glmdir GLMFIT/LH_1GroupAvg_ModVAS_nuissanceAGE_DOSS \--cwpvalthresh .999 \--no-sim GLMFIT/LH_1GroupAvg_Mod
Hi Jeni, what is your command line and terminal output? In general, just
saying that something does not work is not enough information to track
down the problem. Also, please include previous correspondence. We
answer a lot of emails here, and the easier you make it on us, the
faster we can sol
Thansk Doug. I tried it but still doesn't work. Any other thoughts?
jeni
___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the p
Hi Jeni, done pass that path to the csd, just the csd base. In your case
I think it would be 1GroupAvg-Cor-thickness-Mod-VAS
doug
On 4/24/13 8:47 PM, Jeni Chen wrote:
Hello,
I was trying to run mri_glmfit-sim at a lower cwpvalthresh so I
specified the --no-sim option to avoid re-running the
Hello,I was trying to run mri_glmfit-sim at a lower cwpvalthresh so I specified the --no-sim option to avoid re-running the entire simulation again. I entered my DSC file but in the end I get the error message: "cannot find any csd files". Here is what I entered:mri_glmfit-sim \--glmdir GLMFIT/LH_1
12 matches
Mail list logo
