What's your command line? Looks like you might be putting a slash (/) as
the first character to your glmdir. You will not have permissions to
create this directory.
doug
Chindhuri Selvadurai wrote:
> I am actually getting an error message when I type my mri_glmfit command:
>
> ERROR: fio_pushd:
I am actually getting an error message when I type my mri_glmfit command:
ERROR: fio_pushd: /group_analysis/volume/m1/mstmct_v_base/type_v_rest
ERROR: must specify input y file
I did specify a y file and I do not know what fio_pushd is.
> This is controlled by the $FSF_OUTPUT_FORMAT. By defaul
This is controlled by the $FSF_OUTPUT_FORMAT. By default this is
compressed nifti (nii.gz). Both nii and nii.gz store the same
information. The nii.gz is compressed, so you save some space.
doug
Chindhuri Selvadurai wrote:
> Hi freesurfers,
>
> I am trying to run an analysis right now, however,
Hi freesurfers,
I am trying to run an analysis right now, however, after using isxconcat,
I am only finding ces.nii.gz files in the output directory and no .nii
files.
output dir: /cluster/manoach/milton/subjects/group_analysis/volume/m1
subjects_dir: /cluster/manoach/milton/subjects
command: mr
