I am actually getting an error message when I type my mri_glmfit command: ERROR: fio_pushd: /group_analysis/volume/m1/mstmct_v_base/type_v_rest ERROR: must specify input y file
I did specify a y file and I do not know what fio_pushd is. > This is controlled by the $FSF_OUTPUT_FORMAT. By default this is > compressed nifti (nii.gz). Both nii and nii.gz store the same > information. The nii.gz is compressed, so you save some space. > > doug > > Chindhuri Selvadurai wrote: >> Hi freesurfers, >> >> I am trying to run an analysis right now, however, after using >> isxconcat, >> I am only finding ces.nii.gz files in the output directory and no .nii >> files. >> >> output dir: /cluster/manoach/milton/subjects/group_analysis/volume/m1 >> subjects_dir: /cluster/manoach/milton/subjects >> >> command: mri_glmfit --y >> /group_analysis/volume/m1/mstmct_v_base/type_v_rest/ces.nii.gz --glmdir >> group_analysis/volume/m1/ --osgm >> >> Not sure why this is the case.. any help would be appreciated! Thanks! >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html > > > Best, Chindhuri Selvadurai Psychiatric Neuroimaging, Manoach Lab Martinos Center for Biomedical Imaging, MGH Phone: (617)726-0307 _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
