no problem, thanks for tracking it down.
Bruce
On Thu, 15 Jan 2009, Ian Malone
wrote:
The file is the right size, however further investigation shows that
vox_offset in the .hdr file was (incorrectly) non-zero; equal to 1, so
mri_convert is correct in skipping one byte at the start. Sorry f
The file is the right size, however further investigation shows that
vox_offset in the .hdr file was (incorrectly) non-zero; equal to 1, so
mri_convert is correct in skipping one byte at the start. Sorry for the
fuss.
Ian
Douglas N Greve wrote:
Can you verify that the file is the right siz
Can you verify that the file is the right size?
Ian Malone wrote:
Hi,
I'm finding that mri_convert produces a read error when trying to
convert some short analyze files to mgz, invoked as the following:
mri_convert -it analyze -i `pwd`/reslice/00125-003-1.img -o
reslice/mni.mgz
The output
Hi Ian,
do you have a .hdr file for both of them? A .mat?
cheers,
Bruce
On Wed, 14 Jan 2009, Ian
Malone wrote:
Hi,
I'm finding that mri_convert produces a read error when trying to convert
some short analyze files to mgz, invoked as the following:
mri_convert -it analyze -i `pwd`/reslice/
Hi,
I'm finding that mri_convert produces a read error when trying to
convert some short analyze files to mgz, invoked as the following:
mri_convert -it analyze -i `pwd`/reslice/00125-003-1.img -o reslice/mni.mgz
The output contains (the dimensions shown are correct):
ERROR: premature end of f
Hi Joan,
what exactly are you trying to do? You should be able to specify the cc,
wm and pons points to mri_fill without having to synthesize another hemi.
Bruce
On
Sun, 4 Feb 2007, Joan Fisher wrote:
Hi all --
I have edited an anatomical volume (using AFNI's 3dcalc and 3dLRflip
commands)
Joan,
Try using the flag "-it brik" or "-it afni".
The "--help" flag to mri_convert lists all its options.
Nick
On Sun, 2007-02-04 at 14:07 -0600, Joan Fisher wrote:
> Hi all --
> I have edited an anatomical volume (using AFNI's 3dcalc and 3dLRflip
> commands), and the final volume looks good
Hi all --
I have edited an anatomical volume (using AFNI's 3dcalc and 3dLRflip
commands), and the final volume looks good.
My reading is that mri_convert should not have trouble recognizing an
afni BRIK file.
However, the error is: unknown file type for file ...
(The original Volume+orig.BRIK
