no problem, thanks for tracking it down.
Bruce
On Thu, 15 Jan 2009, Ian Malone
wrote:
The file is the right size, however further investigation shows that
vox_offset in the .hdr file was (incorrectly) non-zero; equal to 1, so
mri_convert is correct in skipping one byte at the start. Sorry for the
fuss.
Ian
Douglas N Greve wrote:
Can you verify that the file is the right size?
Ian Malone wrote:
Hi,
I'm finding that mri_convert produces a read error when trying to convert
some short analyze files to mgz, invoked as the following:
mri_convert -it analyze -i `pwd`/reslice/00125-003-1.img -o
reslice/mni.mgz
The output contains (the dimensions shown are correct):
ERROR: premature end of file
ERROR: Success (0)
frame = 0, slice = 219, k=219, row = 155
nread = 171, nexpected = 172
fname =
height = 156
width = 172
depth = 220
and:
analyzeRead2(): error reading from file reslice/00125-003-1.img
The file in question is 11806080 bytes.
Using strace I can see that when the .img file is opened 1 byte is read
from it before reading in blocks of 1024, and a final read of 383 bytes.
Trying another short file (which works) this initial 1 byte read does not
happen. Is this is bug? I can provide the files in question if needed.
Build stamp: freesurfer-Linux-rh9-stable-pub-v4.0.3
Kernel info: Linux 2.6.21.5-smp i686
Thanks,
Ian Malone
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