Re: [Freesurfer] mean hemispheric value in a .mgh

2017-05-11 Thread Douglas N Greve
Use mri_segstats with the --slabel option, eg, mri_segstats --slabel subject $SUBJECTS_DIR/subject/label/lh.cortex --id 1 --i X.mgh --avgwf meanX.dat On 05/10/2017 08:45 AM, Damien MARIE wrote: > Hi, > > I’ve a .mgh that is a volume projected on the surface of the same subject at > mid-thickn

[Freesurfer] mean hemispheric value in a .mgh

2017-05-10 Thread Damien MARIE
Hi, I’ve a .mgh that is a volume projected on the surface of the same subject at mid-thickness (output of mri_vol2surf) . I would like to extract the mean hemipheric value in this X.mgh. I guess it is possible with mris_anatomical stats but probably my command line is incorrect (see below). A