Some how the Yeo dimensions got flipped. Usually, this does not matter,
but in mri_glmfit it does. You can get around this by running
mri_convert lh.Yeo2011_17NetworksConfidence_N1000.mgz --reorder 2 1 3
lh.Yeo2011_17NetworksConfidence_N1000.reordered.mgz
and using the reordered in mri_glmfit
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Thanks for your response! It was in the fsaverage folder when I installed
Freesurfer.
I also have an .nii file. Could I turn it into an .mgz file and maybe it
will have the same dimensions?
Could it also be because I am looking at volume and fsaverage i
It is saying that the mask lhYeo2011_7NetworksConfidence_N1000.mgzdoes
not have thee same dimensions as the input. How was it created? It must
be a surface overlay on fsaverage
On 4/26/2021 6:59 PM, Haley Park wrote:
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Hello,
I am trying to run a correlati
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Hello,
I am trying to run a correlational analysis with glm_fit on a masked area
with the code:
foreach hemi (lh)
foreach smoothness (10)
foreach meas (volume thickness)
mri_glmfit \
--y {$hemi}.{$meas}.{$study}.{$smoothness}
