Check out 1.3 in https://surfer.nmr.mgh.harvard.edu/fswiki/Xhemi
On 9/28/2021 4:07 AM, Yu-Chi Chen wrote:
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Dear FreeSurfer experts,
My current analysis is for analyzing the vertices of the cortical
surfaces.
I'd like to have the same vertice numbers of th
External Email - Use Caution
Dear FreeSurfer experts,
My current analysis is for analyzing the vertices of the cortical surfaces.
I'd like to have the same vertice numbers of the left and right hemispheres
and also to retain as much asymmetric feature as possible.
I first created
OK, I put a new version of xhemireg there that will create the nu.mgz.
The newer version of the talairach do not need nu.mgz which is why I did
not have it in the xhemireg I gave you.
doug
On 06/02/2012 11:12 AM, Irene Altarelli wrote:
> My command was:
> xhemireg --s ac_copie
>
> The terminal o
My command was:
xhemireg --s ac_copie
The terminal output is identical to the log file (attached), ending by:
#@# Talairach Tue May 29 18:24:25 CEST 2012
/home/ialtarelli/DATABASE/Karla5/ac_copie/xhemi/mri
talairach_avi --i nu.mgz --xfm transforms/talairach.auto.xfm
ERROR: input volume nu.mg
Can you send your cmd and terminal output?
doug
On 6/2/12 9:46 AM, Irene Altarelli wrote:
> Dear Doug,
>
> thanks for putting mri_vol2vol on the ftp site, and sorry for bothering
> you again with this. I did as suggested, but I still get an error, now
> when attempting to run xhemireg. Apparently
Dear Doug,
thanks for putting mri_vol2vol on the ftp site, and sorry for bothering
you again with this. I did as suggested, but I still get an error, now
when attempting to run xhemireg. Apparently nu.mgz is missing.
Please find the log attached.
Thank you very much again,
Irene
Le vendredi
You'll need a new version of mri_vol2vol, which I have put on that ftp site.
doug
On 05/18/2012 04:25 AM, Irene Altarelli wrote:
> Thanks for your help, Doug.
>
> It seems as if there is another script problem then, because when
> running the command I get the following error message (log also
> a
Thanks for your help, Doug.
It seems as if there is another script problem then, because when
running the command I get the following error message (log also
attached):
ERROR: Option --keep-precision unknown
I'm using Fs version 5, and the version of xhemireg I have downloaded
is: v 1.22 2012/01
Irene, this is a problem with the script. The work-around is to run
xhemireg before running surfreg with the --xhemi option.
doug
On 05/16/2012 01:56 AM, Irene Altarelli wrote:
> Dear Doug,
>
> here is what I get.
>
> First, I ran surfreg --s aa_tris --t fsaverage_sym --lh and got the
> attached
Hi Irene, can you send the log file for the command that is failing?
doug
On 05/15/2012 01:28 PM, Irene Altarelli wrote:
> Dear all,
>
> I'm trying to use the new script for the inter-hemisphere analysis, in
> Fs version 5.0. I have downloaded the files as suggested
> (http://www.mail-archive.com/
Dear all,
I'm trying to use the new script for the inter-hemisphere analysis, in
Fs version 5.0. I have downloaded the files as suggested
(http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg21706.html).
Surfreg seems to be running fine (surfreg --s subject --t fsaverage_sym
--lh), but
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