My command was: xhemireg --s ac_copie The terminal output is identical to the log file (attached), ending by:
#@# Talairach Tue May 29 18:24:25 CEST 2012 /home/ialtarelli/DATABASE/Karla5/ac_copie/xhemi/mri talairach_avi --i nu.mgz --xfm transforms/talairach.auto.xfm ERROR: input volume nu.mgz does not exist Linux lscp-iao1 2.6.32-5-amd64 #1 SMP Mon Jan 16 16:22:28 UTC 2012 x86_64 GNU/Linux recon-all -s ac_copie/xhemi exited with ERRORS at Tue May 29 18:24:26 CEST 2012 Should I skip that by using the --no-tal flag? Thanks! Irene Le samedi 02 juin 2012 à 10:57 -0400, Douglas Greve a écrit : > Can you send your cmd and terminal output? > doug > > On 6/2/12 9:46 AM, Irene Altarelli wrote: > > Dear Doug, > > > > thanks for putting mri_vol2vol on the ftp site, and sorry for bothering > > you again with this. I did as suggested, but I still get an error, now > > when attempting to run xhemireg. Apparently nu.mgz is missing. > > > > Please find the log attached. > > > > Thank you very much again, > > Irene > > > > > > > > Le vendredi 18 mai 2012 à 11:24 -0400, Douglas N Greve a écrit : > >> You'll need a new version of mri_vol2vol, which I have put on that ftp > >> site. > >> doug > >> > >> On 05/18/2012 04:25 AM, Irene Altarelli wrote: > >>> Thanks for your help, Doug. > >>> > >>> It seems as if there is another script problem then, because when > >>> running the command I get the following error message (log also > >>> attached): > >>> ERROR: Option --keep-precision unknown > >>> > >>> I'm using Fs version 5, and the version of xhemireg I have downloaded > >>> is: v 1.22 2012/01/20 20:12:32. > >>> > >>> Should that --keep-precision option be removed from the script? > >>> > >>> Thank you, > >>> Irene > >>> > >>> > >>> > >>> Le mercredi 16 mai 2012 à 11:16 -0400, Douglas N Greve a écrit : > >>>> Irene, this is a problem with the script. The work-around is to run > >>>> xhemireg before running surfreg with the --xhemi option. > >>>> > >>>> doug > >>>> > >>>> On 05/16/2012 01:56 AM, Irene Altarelli wrote: > >>>>> Dear Doug, > >>>>> > >>>>> here is what I get. > >>>>> > >>>>> First, I ran surfreg --s aa_tris --t fsaverage_sym --lh and got the > >>>>> attached log file. Here is the terminal output: > >>>>> > >>>>> setenv SUBJECTS_DIR /home/ialtarelli/DATABASE/Karla5/ > >>>>> cd /home/ialtarelli > >>>>> /home/ialtarelli/freesurfer/bin/surfreg --s aa_tris --t fsaverage_sym > >>>>> --lh > >>>>> > >>>>> Linux lscp-iao1 2.6.32-5-amd64 #1 SMP Mon Jan 16 16:22:28 UTC 2012 > >>>>> x86_64 GNU/Linux > >>>>> #@# lh mardi 15 mai 2012, 19:23:56 (UTC+0200) > >>>>> #CMD# mris_register -curv -annot > >>>>> aparc.annot /home/ialtarelli/DATABASE/Karla5//aa_tris/surf/lh.sphere > >>>>> /home/ialtarelli/DATABASE/Karla5//fsaverage_sym/lh.reg.template.tif > >>>>> /home/ialtarelli/DATABASE/Karla5//aa_tris/surf/lh.fsaverage_sym.sphere.reg > >>>>> using smoothwm curvature for final alignment > >>>>> zeroing medial wall in aparc.annot > >>>>> $Id: mris_register.c,v 1.56 2010/02/28 23:08:04 fischl Exp $ > >>>>> $Id: mrisurf.c,v 1.678 2010/05/28 21:22:21 rpwang Exp $ > >>>>> reading surface > >>>>> from /home/ialtarelli/DATABASE/Karla5//aa_tris/surf/lh.sphere... > >>>>> reading colortable from annotation file... > >>>>> colortable with 36 entries read > >>>>> (originally > >>>>> /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) > >>>>> reading template parameterization > >>>>> from > >>>>> /home/ialtarelli/DATABASE/Karla5//fsaverage_sym/lh.reg.template.tif... > >>>>> ripping medial wall... > >>>>> writing registered surface > >>>>> to > >>>>> /home/ialtarelli/DATABASE/Karla5//aa_tris/surf/lh.fsaverage_sym.sphere.reg... > >>>>> curvature mean = 0.007, std = 0.603 > >>>>> curvature mean = 0.030, std = 0.806 > >>>>> curvature mean = 0.024, std = 0.853 > >>>>> curvature mean = 0.009, std = 0.826 > >>>>> curvature mean = 0.011, std = 0.936 > >>>>> curvature mean = 0.003, std = 0.836 > >>>>> curvature mean = 0.005, std = 0.972 > >>>>> curvature mean = 0.001, std = 0.837 > >>>>> curvature mean = 0.001, std = 0.988 > >>>>> curvature mean = -0.032, std = 0.312 > >>>>> curvature mean = 0.032, std = 0.124 > >>>>> curvature mean = 0.079, std = 0.315 > >>>>> curvature mean = 0.031, std = 0.151 > >>>>> curvature mean = 0.049, std = 0.489 > >>>>> curvature mean = 0.031, std = 0.165 > >>>>> curvature mean = 0.028, std = 0.631 > >>>>> curvature mean = 0.031, std = 0.171 > >>>>> curvature mean = 0.011, std = 0.749 > >>>>> 159: 0 negative triangles > >>>>> surfreg-Run-Time-Hours aa_tris lh 0 0,90 > >>>>> mardi 15 mai 2012, 20:17:58 (UTC+0200) > >>>>> surfreg done > >>>>> > >>>>> Then, I ran surfreg --s aa_tris --t fsaverage_sym --lh --xhemi and the > >>>>> terminal output is just: > >>>>> > >>>>> ERROR: cannot > >>>>> find /home/ialtarelli/DATABASE/Karla5//aa_tris/xhemi/surf/lh.sphere > >>>>> > >>>>> without any log file, at least I can't find any modified file in the > >>>>> subject's folder. > >>>>> > >>>>> > >>>>> Hope this helps make things clearer. > >>>>> Many thanks in advance! > >>>>> Irene > >>>>> > >>>>> > >>>>> Le mardi 15 mai 2012 à 15:19 -0400, Douglas N Greve a écrit : > >>>>>> Can you send me the command line and terminal output? Did you run > >>>>>> xhemireg first? Should not have had to ... > >>>>>> > >>>>>> On 05/15/2012 03:02 PM, irene.altare...@ens.fr wrote: > >>>>>>> Dear Doug, > >>>>>>> > >>>>>>> where would that log file be? As the /subject/xhemi fails to be > >>>>>>> created the log > >>>>>>> normally appearing in there cannot be found.. Sorry if I misunderstood > >>>>>>> something. > >>>>>>> > >>>>>>> Thanks, > >>>>>>> Irene > >>>>>>> > >>>>>>> > >>>>>>> Selon Douglas N Greve<gr...@nmr.mgh.harvard.edu>: > >>>>>>> > >>>>>>>> Hi Irene, can you send the log file for the command that is failing? > >>>>>>>> doug > >>>>>>>> > >>>>>>>> On 05/15/2012 01:28 PM, Irene Altarelli wrote: > >>>>>>>>> Dear all, > >>>>>>>>> > >>>>>>>>> I'm trying to use the new script for the inter-hemisphere analysis, > >>>>>>>>> in > >>>>>>>>> Fs version 5.0. I have downloaded the files as suggested > >>>>>>>>> (http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg21706.html). > >>>>>>>>> > >>>>>>>>> Surfreg seems to be running fine (surfreg --s subject --t > >>>>>>>>> fsaverage_sym > >>>>>>>>> --lh), but I have problems then with the --xhemi option. Some files > >>>>>>>>> appear to be missing, I get the following error messages: > >>>>>>>>> > >>>>>>>>> ERROR: cannot find /path/subject/xhemi/surf/lh.sphere > >>>>>>>>> ERROR: cannot find /path/subject/xhemi/surf/lh.smoothwm > >>>>>>>>> ERROR: cannot find /path/subject/xhemi/surf/lh.sphere > >>>>>>>>> ERROR: cannot find /path/subject/xhemi/label/lh.aparc.annot > >>>>>>>>> > >>>>>>>>> lh.fsaverage_sym.sphere.reg is created in $subject as it should > >>>>>>>>> (please > >>>>>>>>> find the surfreg log below). > >>>>>>>>> > >>>>>>>>> Thank you in advance, > >>>>>>>>> Irene > >>>>>>>>> > >>>>>>>>> > >>>>>>>>> Log file for surfreg > >>>>>>>>> samedi 12 mai 2012, 17:36:31 (UTC+0200) > >>>>>>>>> > >>>>>>>>> setenv SUBJECTS_DIR /home/ialtarelli/DATABASE/Karla5/ > >>>>>>>>> cd /home/ialtarelli > >>>>>>>>> /home/ialtarelli/freesurfer/bin/surfreg --s aa_copie --t > >>>>>>>>> fsaverage_sym > >>>>>>>>> --lh > >>>>>>>>> > >>>>>>>>> Linux lscp-iao1 2.6.32-5-amd64 #1 SMP Mon Jan 16 16:22:28 UTC 2012 > >>>>>>>>> x86_64 GNU/Linux > >>>>>>>>> #@# lh samedi 12 mai 2012, 17:36:31 (UTC+0200) > >>>>>>>>> #CMD# mris_register -curv -annot > >>>>>>>>> aparc.annot > >>>>>>>>> /home/ialtarelli/DATABASE/Karla5//aa_copie/surf/lh.sphere > >>>>>>>> /home/ialtarelli/DATABASE/Karla5//fsaverage_sym/lh.reg.template.tif > >>>>>>>> /home/ialtarelli/DATABASE/Karla5//aa_copie/surf/lh.fsaverage_sym.sphere.reg > >>>>>>>>> using smoothwm curvature for final alignment > >>>>>>>>> zeroing medial wall in aparc.annot > >>>>>>>>> $Id: mris_register.c,v 1.56 2010/02/28 23:08:04 fischl Exp $ > >>>>>>>>> $Id: mrisurf.c,v 1.678 2010/05/28 21:22:21 rpwang Exp $ > >>>>>>>>> reading surface > >>>>>>>>> from /home/ialtarelli/DATABASE/Karla5//aa_copie/surf/lh.sphere... > >>>>>>>>> reading colortable from annotation file... > >>>>>>>>> colortable with 36 entries read > >>>>>>>>> (originally > >>>>>>> /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) > >>>>>>>>> reading template parameterization > >>>>>>>>> from > >>>>>>>>> /home/ialtarelli/DATABASE/Karla5//fsaverage_sym/lh.reg.template.tif... > >>>>>>>>> ripping medial wall... > >>>>>>>>> writing registered surface > >>>>>>>>> to > >>>>>>>> /home/ialtarelli/DATABASE/Karla5//aa_copie/surf/lh.fsaverage_sym.sphere.reg... > >>>>>>>>> curvature mean = 0.007, std = 0.603 > >>>>>>>>> curvature mean = 0.030, std = 0.806 > >>>>>>>>> curvature mean = 0.024, std = 0.853 > >>>>>>>>> curvature mean = 0.009, std = 0.826 > >>>>>>>>> curvature mean = 0.011, std = 0.936 > >>>>>>>>> curvature mean = 0.003, std = 0.836 > >>>>>>>>> curvature mean = 0.005, std = 0.972 > >>>>>>>>> curvature mean = 0.001, std = 0.837 > >>>>>>>>> curvature mean = 0.001, std = 0.988 > >>>>>>>>> curvature mean = -0.032, std = 0.312 > >>>>>>>>> curvature mean = 0.032, std = 0.124 > >>>>>>>>> curvature mean = 0.079, std = 0.315 > >>>>>>>>> curvature mean = 0.031, std = 0.151 > >>>>>>>>> curvature mean = 0.049, std = 0.489 > >>>>>>>>> curvature mean = 0.031, std = 0.165 > >>>>>>>>> curvature mean = 0.028, std = 0.631 > >>>>>>>>> curvature mean = 0.031, std = 0.171 > >>>>>>>>> curvature mean = 0.011, std = 0.749 > >>>>>>>>> 159: 0 negative triangles > >>>>>>>>> surfreg-Run-Time-Hours aa_copie lh 0 0,84 > >>>>>>>>> samedi 12 mai 2012, 18:26:49 (UTC+0200) > >>>>>>>>> surfreg done > >>>>>>>>> > >>>>>>>>> > >>>>>>>> -- > >>>>>>>> Douglas N. Greve, Ph.D. > >>>>>>>> MGH-NMR Center > >>>>>>>> gr...@nmr.mgh.harvard.edu > >>>>>>>> Phone Number: 617-724-2358 > >>>>>>>> Fax: 617-726-7422 > >>>>>>>> > >>>>>>>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > >>>>>>>> FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html > >>>>>>>> > >>>>>>>> _______________________________________________ > >>>>>>>> Freesurfer mailing list > >>>>>>>> Freesurfer@nmr.mgh.harvard.edu > >>>>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > >>>>>>>> > >>>>>>>> > >>>>>>>> The information in this e-mail is intended only for the person to > >>>>>>>> whom it is > >>>>>>>> addressed. If you believe this e-mail was sent to you in error and > >>>>>>>> the e-mail > >>>>>>>> contains patient information, please contact the Partners Compliance > >>>>>>>> HelpLine > >>>>>>>> at > >>>>>>>> http://www.partners.org/complianceline . If the e-mail was sent to > >>>>>>>> you in > >>>>>>>> error > >>>>>>>> but does not contain patient information, please contact the sender > >>>>>>>> and > >>>>>>>> properly > >>>>>>>> dispose of the e-mail. > >>>>>>>> > >>>>>>>> > >>>>>>>> > >> -- > >> Douglas N. Greve, Ph.D. > >> MGH-NMR Center > >> gr...@nmr.mgh.harvard.edu > >> Phone Number: 617-724-2358 > >> Fax: 617-726-7422 > >> > >> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > >> FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html > >> > >> _______________________________________________ > >> Freesurfer mailing list > >> Freesurfer@nmr.mgh.harvard.edu > >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Irene Altarelli Laboratoire de Sciences Cognitives et Psycholinguistique Ecole Normale Supérieure 29, rue d'Ulm 75230 Paris Cedex 05 tel. +33 (0)1 44 32 26 23
/home/ialtarelli/freesurfer/bin/xhemireg --s ac_copie $Id: xhemireg,v 1.22 2012/01/20 20:12:32 greve Exp $ mardi 29 mai 2012, 18:23:42 (UTC+0200) Linux lscp-iao1 2.6.32-5-amd64 #1 SMP Mon Jan 16 16:22:28 UTC 2012 x86_64 GNU/Linux /home/ialtarelli/DATABASE/Karla5/ac_copie setenv SUBJECTS_DIR /home/ialtarelli/DATABASE/Karla5/ mardi 29 mai 2012, 18:23:42 (UTC+0200) mardi 29 mai 2012, 18:23:42 (UTC+0200) mri_vol2vol --mov mri/orig.mgz --targ mri/orig.mgz --reg /home/ialtarelli/DATABASE/Karla5//ac_copie/xhemi/lrrev.register.dat --o /home/ialtarelli/DATABASE/Karla5//ac_copie/xhemi/mri/orig.mgz --keep-precision --no-save-reg Matrix from regfile: -1.000 0.000 0.000 1.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 0.000; 0.000 0.000 0.000 1.000; movvol mri/orig.mgz targvol mri/orig.mgz outvol /home/ialtarelli/DATABASE/Karla5//ac_copie/xhemi/mri/orig.mgz regfile /home/ialtarelli/DATABASE/Karla5//ac_copie/xhemi/lrrev.register.dat invert 0 tal 0 talres 2 regheader 0 noresample 0 interp trilinear (1) precision uchar (0) Gdiag_no -1 Synth 0 SynthSeed 1338519975 Resampling Output registration matrix is identity mri_vol2vol done mri_vol2vol --mov mri/T1.mgz --targ mri/T1.mgz --reg /home/ialtarelli/DATABASE/Karla5//ac_copie/xhemi/lrrev.register.dat --o /home/ialtarelli/DATABASE/Karla5//ac_copie/xhemi/mri/T1.mgz --keep-precision --no-save-reg Matrix from regfile: -1.000 0.000 0.000 1.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 0.000; 0.000 0.000 0.000 1.000; movvol mri/T1.mgz targvol mri/T1.mgz outvol /home/ialtarelli/DATABASE/Karla5//ac_copie/xhemi/mri/T1.mgz regfile /home/ialtarelli/DATABASE/Karla5//ac_copie/xhemi/lrrev.register.dat invert 0 tal 0 talres 2 regheader 0 noresample 0 interp trilinear (1) precision uchar (0) Gdiag_no -1 Synth 0 SynthSeed 1339218149 Resampling Output registration matrix is identity mri_vol2vol done mri_vol2vol --mov mri/brain.mgz --targ mri/brain.mgz --reg /home/ialtarelli/DATABASE/Karla5//ac_copie/xhemi/lrrev.register.dat --o /home/ialtarelli/DATABASE/Karla5//ac_copie/xhemi/mri/brain.mgz --keep-precision --no-save-reg Matrix from regfile: -1.000 0.000 0.000 1.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 0.000; 0.000 0.000 0.000 1.000; movvol mri/brain.mgz targvol mri/brain.mgz outvol /home/ialtarelli/DATABASE/Karla5//ac_copie/xhemi/mri/brain.mgz regfile /home/ialtarelli/DATABASE/Karla5//ac_copie/xhemi/lrrev.register.dat invert 0 tal 0 talres 2 regheader 0 noresample 0 interp trilinear (1) precision uchar (0) Gdiag_no -1 Synth 0 SynthSeed 1338816872 Resampling Output registration matrix is identity mri_vol2vol done mri_vol2vol --mov mri/brainmask.mgz --targ mri/brainmask.mgz --reg /home/ialtarelli/DATABASE/Karla5//ac_copie/xhemi/lrrev.register.dat --o /home/ialtarelli/DATABASE/Karla5//ac_copie/xhemi/mri/brainmask.mgz --keep-precision --no-save-reg Matrix from regfile: -1.000 0.000 0.000 1.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 0.000; 0.000 0.000 0.000 1.000; movvol mri/brainmask.mgz targvol mri/brainmask.mgz outvol /home/ialtarelli/DATABASE/Karla5//ac_copie/xhemi/mri/brainmask.mgz regfile /home/ialtarelli/DATABASE/Karla5//ac_copie/xhemi/lrrev.register.dat invert 0 tal 0 talres 2 regheader 0 noresample 0 interp trilinear (1) precision uchar (0) Gdiag_no -1 Synth 0 SynthSeed 1338547514 Resampling Output registration matrix is identity mri_vol2vol done mri_vol2vol --mov mri/norm.mgz --targ mri/norm.mgz --reg /home/ialtarelli/DATABASE/Karla5//ac_copie/xhemi/lrrev.register.dat --o /home/ialtarelli/DATABASE/Karla5//ac_copie/xhemi/mri/norm.mgz --keep-precision --no-save-reg Matrix from regfile: -1.000 0.000 0.000 1.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 0.000; 0.000 0.000 0.000 1.000; movvol mri/norm.mgz targvol mri/norm.mgz outvol /home/ialtarelli/DATABASE/Karla5//ac_copie/xhemi/mri/norm.mgz regfile /home/ialtarelli/DATABASE/Karla5//ac_copie/xhemi/lrrev.register.dat invert 0 tal 0 talres 2 regheader 0 noresample 0 interp trilinear (1) precision uchar (0) Gdiag_no -1 Synth 0 SynthSeed 1339303630 Resampling Output registration matrix is identity mri_vol2vol done mri_vol2vol --mov mri/aseg.mgz --targ mri/aseg.mgz --reg /home/ialtarelli/DATABASE/Karla5//ac_copie/xhemi/lrrev.register.dat --o /home/ialtarelli/DATABASE/Karla5//ac_copie/xhemi/mri/aseg.mgz --keep-precision --no-save-reg Matrix from regfile: -1.000 0.000 0.000 1.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 0.000; 0.000 0.000 0.000 1.000; movvol mri/aseg.mgz targvol mri/aseg.mgz outvol /home/ialtarelli/DATABASE/Karla5//ac_copie/xhemi/mri/aseg.mgz regfile /home/ialtarelli/DATABASE/Karla5//ac_copie/xhemi/lrrev.register.dat invert 0 tal 0 talres 2 regheader 0 noresample 0 interp trilinear (1) precision uchar (0) Gdiag_no -1 Synth 0 SynthSeed 1338957273 Resampling Output registration matrix is identity mri_vol2vol done mri_convert /home/ialtarelli/DATABASE/Karla5//ac_copie/xhemi/mri/aseg.mgz /home/ialtarelli/DATABASE/Karla5//ac_copie/xhemi/mri/aseg.mgz --left-right-swap-label mri_convert /home/ialtarelli/DATABASE/Karla5//ac_copie/xhemi/mri/aseg.mgz /home/ialtarelli/DATABASE/Karla5//ac_copie/xhemi/mri/aseg.mgz --left-right-swap-label $Id: mri_convert.c,v 1.194 2012/04/13 03:44:23 greve Exp $ reading from /home/ialtarelli/DATABASE/Karla5//ac_copie/xhemi/mri/aseg.mgz... Performing left-right swap of labels TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /home/ialtarelli/DATABASE/Karla5//ac_copie/xhemi/mri/aseg.mgz... mri_vol2vol --mov mri/aparc+aseg.mgz --targ mri/aparc+aseg.mgz --reg /home/ialtarelli/DATABASE/Karla5//ac_copie/xhemi/lrrev.register.dat --o /home/ialtarelli/DATABASE/Karla5//ac_copie/xhemi/mri/aparc+aseg.mgz --keep-precision --no-save-reg Matrix from regfile: -1.000 0.000 0.000 1.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 0.000; 0.000 0.000 0.000 1.000; movvol mri/aparc+aseg.mgz targvol mri/aparc+aseg.mgz outvol /home/ialtarelli/DATABASE/Karla5//ac_copie/xhemi/mri/aparc+aseg.mgz regfile /home/ialtarelli/DATABASE/Karla5//ac_copie/xhemi/lrrev.register.dat invert 0 tal 0 talres 2 regheader 0 noresample 0 interp trilinear (1) precision int (1) Gdiag_no -1 Synth 0 SynthSeed 1339184551 Resampling Output registration matrix is identity mri_vol2vol done mri_convert /home/ialtarelli/DATABASE/Karla5//ac_copie/xhemi/mri/aparc+aseg.mgz /home/ialtarelli/DATABASE/Karla5//ac_copie/xhemi/mri/aparc+aseg.mgz --left-right-swap-label mri_convert /home/ialtarelli/DATABASE/Karla5//ac_copie/xhemi/mri/aparc+aseg.mgz /home/ialtarelli/DATABASE/Karla5//ac_copie/xhemi/mri/aparc+aseg.mgz --left-right-swap-label $Id: mri_convert.c,v 1.194 2012/04/13 03:44:23 greve Exp $ reading from /home/ialtarelli/DATABASE/Karla5//ac_copie/xhemi/mri/aparc+aseg.mgz... Performing left-right swap of labels TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /home/ialtarelli/DATABASE/Karla5//ac_copie/xhemi/mri/aparc+aseg.mgz... mardi 29 mai 2012, 18:24:20 (UTC+0200) recon-all -sb ac_copie/xhemi -talairach Subject Stamp: freesurfer-Linux-centos4_x86_64-stable-pub-v5.0.0 Current Stamp: freesurfer-Linux-centos4_x86_64-stable-pub-v5.0.0 INFO: SUBJECTS_DIR is /home/ialtarelli/DATABASE/Karla5 Actual FREESURFER_HOME /home/ialtarelli/freesurfer Linux lscp-iao1 2.6.32-5-amd64 #1 SMP Mon Jan 16 16:22:28 UTC 2012 x86_64 GNU/Linux #-------------------------------------------- #@# Talairach Tue May 29 18:24:25 CEST 2012 /home/ialtarelli/DATABASE/Karla5/ac_copie/xhemi/mri talairach_avi --i nu.mgz --xfm transforms/talairach.auto.xfm ERROR: input volume nu.mgz does not exist Linux lscp-iao1 2.6.32-5-amd64 #1 SMP Mon Jan 16 16:22:28 UTC 2012 x86_64 GNU/Linux recon-all -s ac_copie/xhemi exited with ERRORS at Tue May 29 18:24:26 CEST 2012
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