Hi,
To create the surface, I have to define the corpus callosum and the pons as well. I have been suggested to get a talairach transform first, so I did:
(22970 is the subject folder)
$ talairach 22970
but I have received this message:
wpark% talairach 22970
registering 22970
mri_convert orig o
this is probably the problem(from log below):
using +/- offset search region where offset is 48.
mri_fill: could not find pons
No such file or directory
you need to define the pons as well.
you may want to first try to get a good talairach transform. have you run:
talairach 22970
then check to
Hello,
Because I had problems finding automatically the corpus callosum cutting plane, I loaded the wm volume, click in the center of the corpus in coronal view, switch to sagittal plane and used the volume RAS coordinates (tailarach coord says "none"). then I ran this line:
recon-all -stage2 -c
Hi Wan,
Looks like it had difficulty automatically finding the corpus callosum
cutting plane, so you'll have to give it the coordinates manually. To do
so:
Load the WM volume, and click in the dead center of the corpus callosum,
in coronal view. Then switch to a sagittal plane. You should
when i try to create the surface, i receive this message:
/usr/local/freesurfer_package/freesurfer/bin/Darwin/mri_fill -lval 255 -rval 80 -ccmask -T 1 -L /usr/local/freesurfer_package/freesurfer/subjects/23963/mri/tmp/ponscall.dat /usr/local/freesurfer_package/freesurfer/subjects/23963/mri/wm /u
