*Subject:* Re: [Freesurfer] glmfit sig file all zeros
What do you mean it is based on a volumentric sphere? How did you
create it?
On 10/8/2021 1:24 PM, Pedersen, Walker Scott wrote:
If I run without the mask, the output sig file looks normal. If I
overlay the surface ROI and the output
eview, and verify
that it is in the correct location.
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Douglas N. Greve
Sent: Friday, October 8, 2021 10:49 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] glmfit sig file all zeros
What d
i_glmfit done
*From:* freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Douglas N. Greve
*Sent:* Friday, October 8, 2021 9:25 AM
*To:* freesurfer@nmr.mgh.harvard.edu
*Subject:* Re: [Freesurfer] glmfit sig file all zeros
what happens
21 9:25 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] glmfit sig file all zeros
what happens if you run it without the mask?
On 9/29/2021 2:33 PM, Pedersen, Walker Scott wrote:
I just wanted to follow up on this - based on the output I sent previously,
they seem to have the sa
21 1:40 PM
*To:* freesurfer@nmr.mgh.harvard.edu
*Subject:* Re: [Freesurfer] glmfit sig file all zeros
Here is what I get for the mask:
__
Volume information for
/autofs/cluster/neuromod/NIFTI/OCD_NM/derivatives/fsfast/rois/recall/lIFG_surf_ra
be getting good F.nii.gz files,
but bad sig.nii.gz files.
From: Pedersen, Walker Scott
Sent: Thursday, September 23, 2021 1:40 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] glmfit sig file all zeros
Here is what I get fo
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Douglas N. Greve
Sent: Thursday, September 23, 2021 10:19 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] glmfit sig file all zeros
It looks like the mask is the wrong size. What is the
It looks like the mask is the wrong size. What is the dimension of
/autofs/cluster/neuromod/NIFTI/OCD_N
M/derivatives/fsfast/rois/recall/lIFG_surf_rad10.nii.gz
you can check with mri_info
On 9/17/2021 8:32 PM, Pedersen, Walker Scott wrote:
Hi,
I am running glmfit on some functional data (usi
Hi,
I am running glmfit on some functional data (using ces.nii.gz surface files as
input) using ROIs and the --mask argument, that I plan to later submit to
glmfit-sim for small volume correction. I have some rois that are subcortical
and some that are surfaces. For the glmfit run within the
