Re: [Freesurfer] error in mri_glmfit-sim using a per-vertex regressor

2015-11-30 Thread Douglas Greve
that is just a warning, it is not a problem. the results should be fine On 11/30/15 6:28 AM, Carme Uribe Codesal wrote: Dear FreeSurfer users, I am trying to add a per-vertex regressor in my general lineal model (a cortical thickness analysis with the white matter-grey matter contrast paramet

[Freesurfer] error in mri_glmfit-sim using a per-vertex regressor

2015-11-30 Thread Carme Uribe Codesal
Dear FreeSurfer users, I am trying to add a per-vertex regressor in my general lineal model (a cortical thickness analysis with the white matter-grey matter contrast parameter as regressor). I have no problems with the command line mri_glmfit: mri_glmfit --y rh.cth_corr_MMSE.mgh --fsgd cth_corr_M

Re: [Freesurfer] error in mri_glmfit-sim when using --bg and doss

2014-02-24 Thread Douglas N Greve
t; All the best. > Rujing Zha > 2014-02-22 > > charujing123 > > *发件人:*Douglas Greve > *发送时间:*2014-02-21 23:49 > *主题:*Re: [Freesurfer] er

Re: [Freesurfer] error in mri_glmfit-sim when using --bg and doss

2014-02-21 Thread charujing123
发件人:Douglas Greve 发送时间:2014-02-21 23:49 主题:Re: [Freesurfer] error in mri_glmfit-sim when using --bg and doss 收件人:"freesurfer" 抄送: When you actually run the simulation, it only runs it for the first contrast. The simulation is the same for all contrasts, so you can just copy the

Re: [Freesurfer] error in mri_glmfit-sim when using --bg and doss

2014-02-21 Thread Douglas Greve
When you actually run the simulation, it only runs it for the first contrast. The simulation is the same for all contrasts, so you can just copy the csd files from the first contrast to the others, then run mri_glmfit-sim with the --no-sim option doug On 2/21/14 5:47 AM, charujing123 wrote

Re: [Freesurfer] error in mri_glmfit-sim

2009-11-09 Thread Roser Sala
True, I am using version 4.3.1. Can I update only mri_glmfit-sim script?? Thanks 2009/11/9 Douglas N Greve > What version are you using? I think this was a problem with 4.3. > > doug > > Roser Sala wrote: > >> Dear all, >> >> I am running a surface-based group analysis. When I try to run >> mr

Re: [Freesurfer] error in mri_glmfit-sim

2009-11-09 Thread Douglas N Greve
What version are you using? I think this was a problem with 4.3. doug Roser Sala wrote: > Dear all, > > I am running a surface-based group analysis. When I try to run > mri_glmfit-sim, I always get the following error: > > ERROR: you must supply --fwhm with --sim, even if it is 0 > > I get this

[Freesurfer] error in mri_glmfit-sim

2009-11-09 Thread Roser Sala
Dear all, I am running a surface-based group analysis. When I try to run mri_glmfit-sim, I always get the following error: ERROR: you must supply --fwhm with --sim, even if it is 0 I get this error (which does not make any sense, since there is not fwhm info in the simulation) using both qdec-ge