sorry, you are right, the csd files are in the csd folder. The csf file will have a name with the contrast name in it. Copy it to a file with a name where you substitute the old contrast name for another contrast name. doug
On 02/21/2014 09:18 PM, charujing123 wrote: > Hi doug and others, > Thanks doug. > According this information > https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/GroupAnalysis#ViewCSDFile, > > I try to find the csd files in the csd folder(I am not sure this is > what you just told me). But there are the csd files as I run > simulation with --bg option. > Also I try to find the csd files in the first contrast directory, but > I think, maybe I am wrong, none of these is csd files that you suggest. > Doug, would you please describe it more detailly, as I am a new user > for FS? > Thanks doug and others. > All the best. > Rujing Zha > 2014-02-22 > ------------------------------------------------------------------------ > charujing123 > ------------------------------------------------------------------------ > *发件人：*Douglas Greve <gr...@nmr.mgh.harvard.edu> > *发送时间：*2014-02-21 23:49 > *主题：*Re: [Freesurfer] error in mri_glmfit-sim when using --bg and doss > *收件人：*"freesurfer"<freesurfer@nmr.mgh.harvard.edu> > *抄送：* > > When you actually run the simulation, it only runs it for the first > contrast. The simulation is the same for all contrasts, so you can > just copy the csd files from the first contrast to the others, then > run mri_glmfit-sim with the --no-sim option > doug > > > > On 2/21/14 5:47 AM, charujing123 wrote: >> Hi FS experts, >> I ran the mri_glmfit with DOSS, followed by the >> mri_glmfit-sim(running with --bg option). I have 4 contrasts, but >> only the first one has some files of corrected results(i.e. >> mc-z.neg.3.sig.cluster.summary). I donot know why. So I upload the >> log file in the attachment. However, previously I ran mri_glmfit by >> DODS, and mri_glmfit-sim with --bg option.All the contrasts have >> corrected results. >> Thanks. >> All the best. >> Rujing Zha >> 2014-02-21 >> ------------------------------------------------------------------------ >> charujing123 >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
