you can also use mri_vol2vol with --regheader.
Bruce Fischl wrote:
> yes, that sounds right
> Bruce
> On Sun, 11 Apr 2010, Mehul Sampat wrote:
>
>
>> Thanks Bruce. Following that, to convert the rth.mgz back to native space I
>> think I can use the following command:
>> mri_convert -rl orig/001
yes, that sounds right
Bruce
On Sun, 11 Apr 2010, Mehul Sampat wrote:
> Thanks Bruce. Following that, to convert the rth.mgz back to native space I
> think I can use the following command:
> mri_convert -rl orig/001.mgz -rt nearest rth.mgz rth.nii
>
> thanks
> Mehul
>
> On Sun, Apr 11, 2010 at 1:3
Thanks Bruce. Following that, to convert the rth.mgz back to native space I
think I can use the following command:
mri_convert -rl orig/001.mgz -rt nearest rth.mgz rth.nii
thanks
Mehul
On Sun, Apr 11, 2010 at 1:38 PM, Bruce Fischl wrote:
> Hi Mehul,
> try mri_binarize instead. It would be somet
Hi Mehul,
try mri_binarize instead. It would be something like:
mri_binarize --match 49 --i aseg.mgz --o rth.mgz
where 49 is the index for right thalamus proper (from the
FreeSurferColorLUT.txt file) and rth.mgz is the output volume
cheers,
Bruce
On Sun, 11 Apr
2010, Mehul Sampat wrote:
> Hi
Hi Folks,
I would like to create a binary mask volume for the Right-Thalamus (all
voxels of right-thalamus as 1 and 0 otherwise).
I looked at this help page
http://surfer.nmr.mgh.harvard.edu/fswiki/mri_vol2roi
and i think I should use the following command described on this page:
mri_vol2roi --l
