Re: [Freesurfer] create ctab from annot

2018-12-04 Thread Winkelbeiner, Stephanie A
, Douglas N.,Ph.D. Sent: Tuesday, December 04, 2018 10:45 AM To: freesurfer@nmr.mgh.harvard.edu Subject: [EXTERNAL] Re: [Freesurfer] create ctab from annot External Email. Use Caution. Just add --ctab colortable On 12/4/18 9:32 AM, Winkelbeiner, Stephanie A wrote: > External Email -

Re: [Freesurfer] create ctab from annot

2018-12-04 Thread Greve, Douglas N.,Ph.D.
> From: freesurfer-boun...@nmr.mgh.harvard.edu > [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Greve, Douglas > N.,Ph.D. > Sent: Monday, December 03, 2018 7:11 PM > To: freesurfer@nmr.mgh.harvard.edu > Subject: [EXTERNAL] Re: [Freesurfer] create ctab from annot >

Re: [Freesurfer] create ctab from annot

2018-12-04 Thread Winkelbeiner, Stephanie A
7:11 PM To: freesurfer@nmr.mgh.harvard.edu Subject: [EXTERNAL] Re: [Freesurfer] create ctab from annot External Email. Use Caution. You can use mri_annotation2label to extract a color table from the annotation On 12/03/2018 07:06 PM, Bruce Fischl wrote: > Hi Stephanie > > can you give u

Re: [Freesurfer] create ctab from annot

2018-12-03 Thread Greve, Douglas N.,Ph.D.
You can use mri_annotation2label to extract a color table from the annotation On 12/03/2018 07:06 PM, Bruce Fischl wrote: > Hi Stephanie > > can you give us some details about how you generated your fine-grained > parcellation? > > cheers > Bruce > On Mon, 3 Dec 2018, Winkelbeiner, Stephanie A w

Re: [Freesurfer] create ctab from annot

2018-12-03 Thread Bruce Fischl
Hi Stephanie can you give us some details about how you generated your fine-grained parcellation? cheers Bruce On Mon, 3 Dec 2018, Winkelbeiner, Stephanie A wrote: External Email - Use Caution Hi freesurfer-experts,   I used a customized script that produces a more fine-g

[Freesurfer] create ctab from annot

2018-12-03 Thread Winkelbeiner, Stephanie A
External Email - Use Caution Hi freesurfer-experts, I used a customized script that produces a more fine-grained parcellation resulting in an .annot file. I don't seem to have a look-up-table (LUT), however. I tried the following: - mri_annotation2label --> allows me t