Re: [Freesurfer] converting .img to .mgz

2006-06-08 Thread Chacko Cherian
That doesn't seem to work...the error it gives is > > "Unsupported datatype 132" --- Doug Greve <[EMAIL PROTECTED]> wrote: > > You can't use .img files directly in the recon. The > cmd line you have > will work, or you can > > mkdir -p subject_name/orig > mri_convert raw.img subject_name/orig

Re: [Freesurfer] converting .img to .mgz

2006-06-08 Thread Doug Greve
You can't use .img files directly in the recon. The cmd line you have will work, or you can mkdir -p subject_name/orig mri_convert raw.img subject_name/orig/001.mgz Note: make sure that you look at 001.mgz in tkmedit to make sure that it is oriented correct, esp if the .img does not have a .

Re: [Freesurfer] converting .img to .mgz

2006-06-08 Thread Bruce Fischl
that should work. Why do you want another way? Bruce On Thu, 8 Jun 2006, Chacko Cherian wrote: Hi everybody, I ve got a small question on converting .img scans(Analyze) TO .mgz... suppose i have a raw.img(and raw.hdr) file and I want to use recon-all for converting this to .mgz do I just ne

[Freesurfer] converting .img to .mgz

2006-06-08 Thread Chacko Cherian
Hi everybody, I ve got a small question on converting .img scans(Analyze) TO .mgz... suppose i have a raw.img(and raw.hdr) file and I want to use recon-all for converting this to .mgz do I just need to do recon-all -i raw.img -s Or is there any other way I can directly use .img files instead