You can't use .img files directly in the recon. The cmd line you have
will work, or you can
mkdir -p subject_name/orig
mri_convert raw.img subject_name/orig/001.mgz
Note: make sure that you look at 001.mgz in tkmedit to make sure that it
is oriented correct, esp if the .img does not have a .mat
doug
Chacko Cherian wrote:
Hi everybody,
I ve got a small question on converting .img
scans(Analyze) TO .mgz...
suppose i have a raw.img(and raw.hdr) file and I want
to
use recon-all for converting this to .mgz do I just
need to do
recon-all -i raw.img -s <subject_name>
Or is there any other way I can directly use .img
files instead of converting to the native .mgz
format...?
Thanks a lot,in advance
Chacko.
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