mri_glmfit-sim --glmdir group.glm --cache 3 pos --cwpvalthresh .0166
> >>> cmdline mri_glmfit --y ces.nii.gz --wls cesvar.nii.gz --osgm
> >>> --glmdir group.glm --nii.gz --surface fsaverage lh
> >>> SURFACE: fsaverage lh
> >>> log file is group.glm/cach
.gz --wls cesvar.nii.gz --osgm
> >>> --glmdir group.glm --nii.gz --surface fsaverage lh
> >>> SURFACE: fsaverage lh
> >>> log file is group.glm/cache.mri_glmfit-sim.log
> >>>
> >>> cd
> >>>
> >>
> /applicat
ications/freesurfer/bsmt_project/doors_group_51014/doors11.lh/r-vs-nr
>>> /Applications/freesurfer/bin/mri_glmfit-sim
>>> --glmdir group.glm --cache 3 pos --cwpvalthresh .0166
>>>
>>> $Id: mri_glmfit-sim,v 1.36.2.5 2012/10/01 22:31:37 greve Exp $
>>>
;>>
>> /applications/freesurfer/bsmt_project/doors_group_51014/doors11.lh/r-vs-nr
>>> /Applications/freesurfer/bin/mri_glmfit-sim
>>> --glmdir group.glm --cache 3 pos --cwpvalthresh .0166
>>>
>>> $Id: mri_glmfit-sim,v 1.36.2.5 2012/10/01 22:31:37 greve
; Darwin Eran-Harels-MacBook-Pro.local 10.8.0 Darwin Kernel Version
> > 10.8.0: Tue Jun 7 16:33:36 PDT 2011;
> > root:xnu-1504.15.3~1/RELEASE_I386 i386
> > eiran
> > setenv SUBJECTS_DIR /Applications/freesurfer/subjects
> > FREESURFER_HOME /Applications/freesurfer
>
; cmdline mri_glmfit --y ces.nii.gz --wls cesvar.nii.gz --osgm --glmdir
> group.glm --nii.gz --surface fsaverage lh
>
> DoSim = 0
> UseCache = 1
> DoPoll = 0
> DoPBSubmit = 0
> DoBackground = 0
> DiagCluster = 0
> gd2mtx = dods
> fwhm = nan
> ERROR: cannot find
>
; setenv SUBJECTS_DIR /Applications/freesurfer/subjects
> FREESURFER_HOME /Applications/freesurfer
>
> Original mri_glmfit command line:
> cmdline mri_glmfit --y ces.nii.gz --wls cesvar.nii.gz --osgm --glmdir
> group.glm --nii.gz --surface fsaverage lh
>
> DoSim = 0
> UseC
/lh/cortex/fwhm00/pos/th30/mc-z.csd
Any ideas?Thanks,Eiran
Subject: Re: [Freesurfer] confirm 5db71d8d19a634948b059d302f95d798f665a638
Date: Mon, 02 Mar 2015 14:17:39 -0500
From: Douglas N Greve
Reply-To: Freesurfer support list
To: freesurfer@nmr.mgh.harvard.edu
That is strange. Can you send the f
That is strange. Can you send the full terminal output from the first
call to mri_glmfit-sim?
doug
On 02/23/2015 03:49 AM, Eiran Vadim Harel wrote:
> Hello Freesurfers,
>
> I use freesurfer v5.3.0
>
> When I do group analysis correction for multiple comparisons for lh as
> follows:
>
> mri_glmf
Hello Freesurfers,
I use freesurfer v5.3.0
When I do group analysis correction for multiple comparisons for lh as follows:
mri_glmfit --y ces.nii.gz --wls cesvar.nii.gz --osgm --glmdir group.glm
--nii.gz --surface fsaverage lh
mri_glmfit-sim --glmdir group.glm --cache 3 pos --cwpvalthresh .0166
I
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