That is strange. Can you send the full terminal output from the first call to mri_glmfit-sim? doug
On 02/23/2015 03:49 AM, Eiran Vadim Harel wrote: > Hello Freesurfers, > > I use freesurfer v5.3.0 > > When I do group analysis correction for multiple comparisons for lh as > follows: > > mri_glmfit --y ces.nii.gz --wls cesvar.nii.gz --osgm --glmdir > group.glm --nii.gz --surface fsaverage lh > > mri_glmfit-sim --glmdir group.glm --cache 3 pos --cwpvalthresh .0166 > > I get this error message: > > ERROR: cannot find > /Applications/freesurfer/average/mult-comp-cor/fsaverage/lh/cortex/fwhm00/pos/th30/mc-z.csd > > For the mkanalysis-sess i used fwhm = 5. > > When i do the same for mni305 and use: > > mri_glmfit --y ces.nii.gz --wls cesvar.nii.gz --osgm --glmdir > group.glm --nii.gz > > mri_glmfit-sim --glmdir group.glm --grf 3 pos --cwpvalthresh .0166 > > It works well without an error. > > Thanks, > Eiran > > > On Monday, February 23, 2015 10:37 AM, > "freesurfer-requ...@nmr.mgh.harvard.edu" > <freesurfer-requ...@nmr.mgh.harvard.edu> wrote: > > > Mailing list subscription confirmation notice for mailing list > Freesurfer > > We have received a request from 79.177.55.71 for subscription of your > email address, "eiranha...@yahoo.com <mailto:eiranha...@yahoo.com>", > to the > freesurfer@nmr.mgh.harvard.edu <mailto:freesurfer@nmr.mgh.harvard.edu> > mailing list. To confirm that you want > to be added to this mailing list, simply reply to this message, > keeping the Subject: header intact. Or visit this web page: > > https://mail.nmr.mgh.harvard.edu/mailman/confirm/freesurfer/5db71d8d19a634948b059d302f95d798f665a638 > > > Or include the following line -- and only the following line -- in a > message to freesurfer-requ...@nmr.mgh.harvard.edu > <mailto:freesurfer-requ...@nmr.mgh.harvard.edu>: > > confirm 5db71d8d19a634948b059d302f95d798f665a638 > > Note that simply sending a `reply' to this message should work from > most mail readers, since that usually leaves the Subject: line in the > right form (additional "Re:" text in the Subject: is okay). > > If you do not wish to be subscribed to this list, please simply > disregard this message. If you think you are being maliciously > subscribed to the list, or have any other questions, send them to > freesurfer-ow...@nmr.mgh.harvard.edu. > <mailto:freesurfer-ow...@nmr.mgh.harvard.edu.> > > > The information in this e-mail is intended only for the person to whom > it is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you > in error > but does not contain patient information, please contact the sender > and properly > dispose of the e-mail. > > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
