Hi Matthew,
I'll send you two header files of affected scans by private e-mail. I heard the
tool is being upgraded to use nibabel v2.0, but we haven't been able to test if
the problem is still present in the latest version.
Regards,
Jalmar
On Jun 11, 2015, at 06:47 PM, Matthew Brett wrote:
Hi,
On Thu, Jun 11, 2015 at 2:09 AM, Jalmar Teeuw wrote:
> Hi Matthew,
>
> Thanks for getting back at this. We only process data for our users, so I
> don't have permission to share a sample with you. But I'll ask around to see
> if I can get a scan for you.
>
> To be honest, we aren't quite su
Hi Matthew,
Thanks for getting back at this. We only process data for our users, so I don't
have permission to share a sample with you. But I'll ask around to see if I can
get a scan for you.
To be honest, we aren't quite sure if the problem is with nibabel (v1.3.0). I
tried to reproduce the p
Hi,
> We had the same problem with importing scans into Freesurfer that had been
> converted from PAR/REC to NIFTI using nipy. The problem only affected a
> subset of the data. When visualising the data with Fiji the brain appeared
> highly skewed. Upon closer inspection of the header data of the
Kriegel, Jennifer Lynn Sarai
>> wrote:
>>
>> mricro
>>
>> -Original Message-
>> From: freesurfer-boun...@nmr.mgh.harvard.edu
>> [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Douglas N
>> Greve
>> Sent: Tuesday,
urfer-boun...@nmr.mgh.harvard.edu
[mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Jalmar Teeuw
Sent: Wednesday, June 10, 2015 4:10 AM
To: Freesurfer support list
Subject: Re: [Freesurfer] bad magic number
Hi Jennifer,
We had the same problem with importing scans into Freesurfer that had been
conv
n 09 Jun 2015, at 22:21, Kriegel, Jennifer Lynn Sarai
> wrote:
>
> mricro
>
> -Original Message-
> From: freesurfer-boun...@nmr.mgh.harvard.edu
> [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Douglas N Greve
> Sent: Tuesday, June 09, 2015 3:16 PM
>
mricro
-Original Message-
From: freesurfer-boun...@nmr.mgh.harvard.edu
[mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Douglas N Greve
Sent: Tuesday, June 09, 2015 3:16 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] bad magic number
how was it created?
On
ischl
> Sent: Tuesday, June 09, 2015 3:02 PM
> To: Freesurfer support list
> Subject: Re: [Freesurfer] bad magic number
>
> Hi Jennifer
>
> can MRIcro read it? Usually that means it is corrupted Bruce
>
>
> On Tue, 9 Jun 2015, Kriegel, Jennifer Lynn Sarai
> wrote:
>
&
MRIcro opens it, and so does SPM 8.
-Original Message-
From: freesurfer-boun...@nmr.mgh.harvard.edu
[mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Bruce Fischl
Sent: Tuesday, June 09, 2015 3:02 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] bad magic number
Hi
Hi Jennifer
can MRIcro read it? Usually that means it is corrupted
Bruce
On Tue, 9 Jun 2015, Kriegel, Jennifer Lynn Sarai
wrote:
Hi,
I’m getting a bad magic number error using mri_convert. I’m trying to
convert a .nii file to a .mgz file. I’ve searched all over and all I can
find is th
Hi,
I'm getting a bad magic number error using mri_convert. I'm trying to convert a
.nii file to a .mgz file. I've searched all over and all I can find is that you
can use python in another program to delete this number, and it is related to
the file extension. I've tried using the .nifti1 exte
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