Hi Michael
where did you the T1.nii file come from? Do you have the dicoms that were
used to create it? It will indeed continue to fail until you fix the file
so that the anatomical directions are correct (which you can verify by
viewing it in freeview)
cheers
Bruce
On Mon, 3 Jul 2017, Micha
Hi Bruce, i used a T1.nii file at the beginning and performed the standard
recon-all to convert the file just like i did with the rest of them. I deleted
the file and run it again but it still produced the same results using this
method.
Kind regards, Michael
> On 3 Jul 2017, at 15:05, Bruce
Hi Michael
if it loaeds in freeview upside down then everything else will fail. What
format did it start as? Best to use dicoms directly if you can, and avoid
analyze. In any case, make sure that the directions are correct at the
beginning (that is, for the file that you give to recon-all as th
