Hi Bruce, i used a T1.nii file at the beginning and performed the standard recon-all to convert the file just like i did with the rest of them. I deleted the file and run it again but it still produced the same results using this method.
Kind regards, Michael > On 3 Jul 2017, at 15:05, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > > Hi Michael > > if it loaeds in freeview upside down then everything else will fail. What > format did it start as? Best to use dicoms directly if you can, and avoid > analyze. In any case, make sure that the directions are correct at the > beginning (that is, for the file that you give to recon-all as the input). > > cheers > Bruce > > > On Mon, 3 Jul 2017, Michael Davies wrote: > >> >> Hello, i was wondering if you could possibly help me with a subjects file >> that has loaded badly. It not only loaded up-side down but looks as though >> there are additional deficits that need correcting. Any tips or advice would >> be greatly appreciated! >> >> >> Kind regard, Michael >> >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
