Re: [Freesurfer] anat2dti error after dt_recon

2019-02-19 Thread Daniel Callow
External Email - Use Caution Hi Douglas! Thank you for the response. I figured out it was simply an issue with the pathing to the register.dat file! Thanks, *Daniel Callow* *PhD Student, Neuroscience and Cognitive Science* Exercise for Brain Health Lab University of Maryland, Col

Re: [Freesurfer] anat2dti error after dt_recon

2019-02-19 Thread Greve, Douglas N.,Ph.D.
what do you get when you run ls -l /Volumes/DANIEL/dti_freesurf/dtrecon/AES139.Rest/register.dat On 2/19/19 8:44 AM, Daniel Davidson Callow wrote: > > External Email - Use Caution > > Hello, > > I ran a successful dt_recon and then wanted to use > > mri_vol2vol --mov $subj_dir/dtrecons/${s

[Freesurfer] anat2dti error after dt_recon

2019-02-19 Thread Daniel Davidson Callow
External Email - Use Caution Hello, I ran a successful dt_recon and then wanted to use mri_vol2vol --mov $subj_dir/dtrecons/${subj}.${cond}/lowb.nii.gz --targ $subj_dir/diffusion_recons/${subj}.${cond}/mri/aparc+aseg.mgz --inv --interp nearest --o $subj_dir/dtrecons/${subj}.${con