Re: [Freesurfer] after PialEdit_tktools

2013-12-10 Thread Rujing Zha
Dear Bruce, Thanks. I see. All the best. 2013-12-10 Rujing Zha 发件人：Bruce Fischl 发送时间：2013-12-10 21:29 主题：Re: [Freesurfer] after PialEdit_tktools 收件人："Rujing Zha" 抄送："freesurfer" sorry, looking at the script, I think: recon-all -autorecon-pial -s should be all y

Re: [Freesurfer] after PialEdit_tktools

2013-12-10 Thread Bruce Fischl
e best.   2013-12-10 Rujing Zha 发件人：Bruce Fischl 发送时间：2013-12-10 21:17 主题：Re: [Freesurfer] after PialEdit_tktools 收件人："Rujing Zha" 抄送："freesurfer"   Hi Rujing,    yes, you should run -autoreco

Re: [Freesurfer] after PialEdit_tktools

2013-12-10 Thread Rujing Zha
se tell me which one I should use? Thanks. All the best. 2013-12-10 Rujing Zha 发件人：Bruce Fischl 发送时间：2013-12-10 21:17 主题：Re: [Freesurfer] after PialEdit_tktools 收件人："Rujing Zha" 抄送："freesurfer" Hi Rujing, yes, you should run -autorecon2-pial -autorecon3 cheers Bruce

Re: [Freesurfer] after PialEdit_tktools

2013-12-10 Thread Bruce Fischl
jing Zha" 发送时间：2013-12-10 12:03 主题：[Freesurfer] after PialEdit_tktools 收件人："freesurfer" 抄送：   Dear all, I run "recon-all -autorecon-pial -s subjects" after editing the pial by PialEdit_tktools. However I only find "-autorecon2-pial" option in recon-all m

Re: [Freesurfer] after PialEdit_tktools

2013-12-10 Thread Bruce Fischl
Hi Rujing, yes, you should run -autorecon2-pial -autorecon3 cheers Bruce On Tue, 10 Dec 2013, Rujing Zha wrote: Dear all, I run "recon-all -autorecon-pial -s subjects" after editing the pial by PialEdit_tktools. However I only find "-autorecon2-pial" option in recon-all manual. So I donot kn

Re: [Freesurfer] after PialEdit_tktools

2013-12-10 Thread Rujing Zha
charujing...@163.com 发件人："Rujing Zha" 发送时间：2013-12-10 12:03 主题：[Freesurfer] after PialEdit_tktools 收件人："freesurfer" 抄送： Dear all, I run "recon-all -autorecon-pial -s subjects" after editing the pial by PialEdit_tktools. However I only find "-autorecon2-

[Freesurfer] after PialEdit_tktools

2013-12-09 Thread Rujing Zha
Dear all, I run "recon-all -autorecon-pial -s subjects" after editing the pial by PialEdit_tktools. However I only find "-autorecon2-pial" option in recon-all manual. So I donot know whether I should run the "recon-all -s subjects -autorecon3" to complete all the 31 stages? Thanks. All the best.