Re: [Freesurfer] a few short confirmatory questions

2014-08-13 Thread Bruce Fischl
t;>> -Original Message- >>> From: freesurfer-boun...@nmr.mgh.harvard.edu [mailto:freesurfer- >>> boun...@nmr.mgh.harvard.edu] On Behalf Of Douglas N Greve >>> Sent: Wednesday, August 13, 2014 2:21 PM >>> To: freesurfer@nmr.mgh.harvard.edu >>

Re: [Freesurfer] a few short confirmatory questions

2014-08-13 Thread Douglas N Greve
> > > > Regards, > > > > Don > > > >> -Original Message- > >> From: freesurfer-boun...@nmr.mgh.harvard.edu > <mailto:freesurfer-boun...@nmr.mgh.harvard.edu> > [mailto:freesurfer- <mailto:freesurfer-

Re: [Freesurfer] a few short confirmatory questions

2014-08-13 Thread Krieger, Donald N.
Gschwind [markus.gschw...@gmail.com] Sent: Wednesday, August 13, 2014 3:08 PM To: Freesurfer support list Subject: Re: [Freesurfer] a few short confirmatory questions Hi! You probably mean mris_expand which creates a surf inside or outside of white, e.g. mris_expand surf/lh.white -1 surf

Re: [Freesurfer] a few short confirmatory questions

2014-08-13 Thread Markus Gschwind
riginal Message- > >> From: freesurfer-boun...@nmr.mgh.harvard.edu [mailto:freesurfer- > >> boun...@nmr.mgh.harvard.edu] On Behalf Of Douglas N Greve > >> Sent: Wednesday, August 13, 2014 2:21 PM > >> To: freesurfer@nmr.mgh.harvard.edu > >>

Re: [Freesurfer] a few short confirmatory questions

2014-08-13 Thread Douglas N Greve
t; gray matter. > > Regards, > > Don > >> -Original Message- >> From: freesurfer-boun...@nmr.mgh.harvard.edu [mailto:freesurfer- >> boun...@nmr.mgh.harvard.edu] On Behalf Of Douglas N Greve >> Sent: Wednesday, August 13, 2014 2:21 PM >> To: freesur

Re: [Freesurfer] a few short confirmatory questions

2014-08-13 Thread Krieger, Donald N.
gray matter. Regards,   Don > -Original Message- > From: freesurfer-boun...@nmr.mgh.harvard.edu [mailto:freesurfer- > boun...@nmr.mgh.harvard.edu] On Behalf Of Douglas N Greve > Sent: Wednesday, August 13, 2014 2:21 PM > To: freesurfer@nmr.mgh.harvard.edu > Subject: Re:

Re: [Freesurfer] a few short confirmatory questions

2014-08-13 Thread Douglas N Greve
On 08/13/2014 02:11 PM, Krieger, Donald N. wrote: > > mri_annotation2label enables extraction of vectors from .annot files > to .label files, one file per label. > > One may choose orig, white, or pial vectors. > > (1)orig vectors are on the cortical surface. The gray scale value for > each of t

[Freesurfer] a few short confirmatory questions

2014-08-13 Thread Krieger, Donald N.
mri_annotation2label enables extraction of vectors from .annot files to .label files, one file per label. One may choose orig, white, or pial vectors. (1)orig vectors are on the cortical surface. The gray scale value for each of these is that of gray matter, correct? And these are inside