Re: [Freesurfer] Water threshold for skull strip : 1% is still too high

2008-12-15 Thread Bruce Fischl
Hi Julien, if you put the nu.mgz on our filedrop we'll take a look. cheers, Bruce On Mon, 15 Dec 2008, Julien Dubois wrote: Hi all I can't get freesurfer to strip the skull properly, even with a water threshold of 1%. There is still so much skull (csf) remaining that a manual edit is not do

[Freesurfer] Water threshold for skull strip : 1% is still too high

2008-12-15 Thread Julien Dubois
Hi all I can't get freesurfer to strip the skull properly, even with a water threshold of 1%. There is still so much skull (csf) remaining that a manual edit is not doable. Is there a way to preprocess the anatomical scan to correct this? ( I tried a water threshold of 0% although I'm not sure tha