Hi all I can't get freesurfer to strip the skull properly, even with a water threshold of 1%. There is still so much skull (csf) remaining that a manual edit is not doable. Is there a way to preprocess the anatomical scan to correct this? ( I tried a water threshold of 0% although I'm not sure that it makes any sense - the result is attached, this time too much skull disappeared).
- Julien
<<attachment: sagittal_wthr0.jpg>>
<<attachment: sagittal_wthr1.jpg>>
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