Hi Phoebe - I don't have permission to access your files, but do you have
FSLOUTPUTTYPE set to anything other than nifti by any chance?
a.y
On Thu, 14 Jul 2011, pho...@nmr.mgh.harvard.edu wrote:
> Hi Priti,
>
> Thank you for your help. I get through the fslroi successfully by setting
> the nb
Hi Priti,
Thank you for your help. I get through the fslroi successfully by setting
the nb0 variable. The lowb.nii.gz looks fine. However, when the process
comes to bet, there's another error prompt for lowb.nii.gz.hdr.
fslmaths
/autofs/space/guasha_001/users/phoebe/strab_func_chan4/strab_func
Hi Phoebe,
The fslroi part extracts all the low-b images from the 4D diffusion data
and creates an average low-b mask.
fslroi
is the number of 3D low-b volumes to be extracted from the 4D
diffusion volume. For some reason tracula is unable to read the no. of
low-b images from your dicom hea
Hi,
I do the pre-processing with the following command:
trac-all -prep -c ./scripts/dmrirc_single_subject
THe process exits with error when it comes to fslroi (attached pls find
the log file). I try to re-run the fslroi command as follow:
fslroi
/autofs/space/guasha_001/users/phoebe/strab_func
