Re: [Freesurfer] Third party dependencies directory not found when building from source

External Email - Use Caution Hello Christian, I have not checked 'make check' procedure, 'recon-all' with my compiled binary was finished without error and segmentation results looks nice. It may be OK for my environment. Using '-use-gpu' and '-openmp 8' flag, the time of 'reco

Re: [Freesurfer] Third party dependencies directory not found when building from source

External Email - Use Caution ​Hello Christian, When a test fails, it should leave behind a log in the subdir for the command, e.g., if the test for ./mri_aparc2aseg fails, then there should be a /mri_aparc2aseg fails,/test_mri_aparc2aseg.log to look at.  But you will need a pyth

Re: [Freesurfer] Third party dependencies directory not found when building from source

ect: Re: [Freesurfer] Third party dependencies directory not found when building from source External Email - Use Caution ​Hello Kazuhiro, With the old configure/automake tools, I used the following configure command on a CentOS7 machine (release 7.4.17-8) to build with the 5.0.35 Cud

Re: [Freesurfer] Third party dependencies directory not found when building from source

External Email - Use Caution Thank you for information of build parameter at CentOS6 packages archive. I also remember. Ubuntu 18.04 Default gcc/g++/gfortran compiler is now version 7.3.0-27. Therefore, at the compilation of freesurfer in Ubuntu 18.04, I have installed gfortran-

Re: [Freesurfer] Third party dependencies directory not found when building from source

External Email - Use Caution ​Hello Kazuhiro, With the old configure/automake tools, I used the following configure command on a CentOS7 machine (release 7.4.17-8) to build with the 5.0.35 Cuda distribution with the CentOS6 packages archive.  (My cuda 5 distribution was installe

Re: [Freesurfer] Third party dependencies directory not found when building from source

External Email - Use Caution ​Hello Christian, To build Freesurfer e.g., on CentOS7, we use rev 4.8.5 of gcc, g++ and gfortran.  You can tell cmake what compilers to use on the command line with CC=/gcc  CXX=/g++  FC=/gfortran  If you need to specify the gfortr

Re: [Freesurfer] Third party dependencies directory not found when building from source

External Email - Use Caution Hi, I'm Kazuhiro. I also met trouble for compilation of freesurfer stable6 repository under my Ubuntu 18.04 LTS machine. Even the binary package of freesurfer6.0(freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0.tar.gz) can work under Ubuntu 18.04, o

Re: [Freesurfer] Third party dependencies directory not found when building from source

y advice? I did not find any similar issues in the archive. Thank you very much, Christian McDaniel From: fsbuild Sent: Wednesday, October 31, 2018 2:29:59 AM To: freesurfer@nmr.mgh.harvard.edu Cc: Christian Lee Mcdaniel Subject: Re: [Freesurfer] Third party de

Re: [Freesurfer] Third party dependencies directory not found when building from source

External Email - Use Caution ​Hello Christian, Allow me to suggest that you try following the instructions for the Fresrufer cmake build located here, http://freesurfer.net/fswiki/CMake Besides the option to build the 3rd party packages with build_packages.py script, you can also

[Freesurfer] Third party dependencies directory not found when building from source

External Email - Use Caution Hello Developers, I am attempting to build Freesurfer from source on my Ubuntu 18.04.1 LTS machine. I have followed the instructions on the freesurfer_linux_developers wiki, and have suc