Can you send the exact command line you are using (no wildcards or
substitutions) and the terminal output that you get?
On 04/15/2014 11:52 AM, sabin khadka wrote:
> Hi Doug,
> Thanks for the reply.
> Those are the two steps I followed to extract vertexwise surface area,
> thickness and pial_lg
Hi Doug,
Thanks for the reply.
Those are the two steps I followed to extract vertexwise surface area,
thickness and pial_lgi values
Step 1: mri_surf2surf --hemi ?h --srcsubject SUB001 [thickness, area or
pial_lgi] --src_type curv --trgsubject fsaverage --trgsurfval SUB001-area
--trg_type curv
what is your command line? The one below is not a valid command line.
On 04/15/2014 11:23 AM, sabin khadka wrote:
> Hi all,
>
> Related question to this.
> I am trying to extract vertexwise surface area values in an ascii
> files. For that I am doing
>
> mri_surf2surf --hemi ?h --srcsubject area
Hi all,
Related question to this.
I am trying to extract vertexwise surface area values in an ascii files. For
that I am doing
mri_surf2surf
--hemi ?h --srcsubject area --src_type curv
--trgsubject fsaverage --trgsurfval XYZ-area --trg_type curv
mris_convert -c XYZ-area ?h.white XYZ-area.asc
I’m trying to find a way to extract thickness values at each vertex for a given
subject, and as a part of that process I need to ensure that each subject has
been mapped to a common area, such that their vertices have a direct
correspondence, but I’m not entirely sure how to go about it.
I’ve
In the QDEC output folder in each contrast there will be a file named
something like cache.th20.abs.y.ocn.dat. This will have a row for each
subject and a column for each cluster. The value is the mean thickness
for that subject for that cluster. Is this what you need?
doug
On 02/02/2014 01
Hello Freesurfers,
Is there anyway (command, anything on QDEC) to get a list of the thickness
values in the significant clusters? Specifically, is there anyway to get
the actual value of the maximum thickness in the blobs (in millimeters)? Or
the mean thickness of the blobs for each subject?
Than
If you don't have MatLAB, you can also do:
$>mris_calc -out lh.thickness.asc lh.thickness ascii
which will convert the 'lh.thickness' into an ascii file (in this case,
'lh.thickness.asc') containing the thickness per vertex per line.
Incidentally, this will work with any FreeSurfer curvature fi
Hi Ana,
yes, it's stored in the ?h.thickness file, which you can load into matlab
or tksurfer for visualization/analysis.
cheers
Bruce
On Tue, 4 May 2010, Ana Catarino
wrote:
> Hello,
>
> Does anyone know if there is a way of getting access to the values of
> thickness for each voxel / point i
*Use the commands:*
*mri_surf2surf --s subject --hemi lh --sval-tal-xyz white **--tval-xyz
--tval lh.white.tal**
*
*mris_convert lh.white.tal lh.white.tal.asc*
Ref:
https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2009-August/011618.html
You can make search in previous answers of the ma
Hello,
Does anyone know if there is a way of getting access to the values of
thickness for each vertex in the mesh?
Thank you,
Ana Catarino
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Hello,
Does anyone know if there is a way of getting access to the values of
thickness for each voxel / point in the mesh?
Thank you,
Ana Catarino
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