Re: [Freesurfer] Talairach problem

2006-12-01 Thread Jenni Pacheco
Hi Akram, Can you copy one of these subjects to: /space/tensor/14/users/jenni/testdir and I will play with it and see what I can do - I have some scripts that might do something. Jenni On Fri, 1 Dec 2006, Akram Bakkour wrote: Hi, I'm running everything on thigpen. setenv SUBJECTS_DIR /sp

[Freesurfer] Talairach problem

2006-12-01 Thread Akram Bakkour
Hi, I'm running everything on thigpen. setenv SUBJECTS_DIR /space/thigpen/8/users/akram/ADNI_processing I'm having trouble fixing the talairach of these 4 subjects: 005_S_0572 023_S_0030 116_S_0382 126_S_0405 I've tried: mri_convert brainmask.mgz brainmask.mnc mritotal -protocol icbm brainma