Hi Akram,
Can you copy one of these subjects to:
/space/tensor/14/users/jenni/testdir
and I will play with it and see what I can do - I have some scripts that
might do something.
Jenni
On Fri, 1 Dec 2006, Akram Bakkour wrote:
Hi,
I'm running everything on thigpen.
setenv SUBJECTS_DIR /space/thigpen/8/users/akram/ADNI_processing
I'm having trouble fixing the talairach of these 4 subjects: 005_S_0572
023_S_0030 116_S_0382 126_S_0405
I've tried:
mri_convert brainmask.mgz brainmask.mnc
mritotal -protocol icbm brainmask.mnc brainmask.xfm
cp brainmask.xfm transforms/talairach.xfm
This worked for a few other subjects which had similar talairach problems,
but didn't work for these four.
I tried loading them in tkregister2:
tkregister2 --mgz --s $subject --fstal
but the volume won't load.
Any suggestions how to fix these talairachs?
Thanks!
Akram.
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