Hi Elijah - Does the directory in the error message exist?
a.y
On Fri, 19 Aug 2016, Elijah Mak wrote:
Hi Anastasia,
The error message occurs for other control points too, but it does not kill the
-prior stage.
I have attached the full trac-all.log file.
This error message is also found in
Hi Elijah - This error occurs with one number of control points but not
another? That would be very strange. I'd have to look at the full
trac-al.log to figure it out, I can't guess what's going on just from this
one line unfortunately.
a.y
On Fri, 19 Aug 2016, Elijah Mak wrote:
Hi Anasta
Hi Anastasia,
Thanks, it works, but only for MNI reg option. For the CVS stream, there
was an error message during -prior.
ERROR: fio_pushd:
/Users/MacPro/Documents/22995_EM/dmri/xfms/cvs/final_CVSmorph_tocvs_avg35/mri
This error message did not halt the process though. Could this be a clue?
Th
Mmm, it sounds like the shape of the tract is too convoluted for it to
find a good fit. I'd try increasing the # of control points.
On Fri, 19 Aug 2016, Elijah Mak wrote:
Hi Anastasia,
Thank you for looking into that subject. I have tried reinitiliasation a few
times and in all cases, it
ju
Hi Anastasia,
Thank you for looking into that subject. I have tried reinitiliasation a
few times and in all cases, it just could not find a satisfactory control
point fit during the -prior stage. Therefore, the -prior stage has been
running for more than 10 hours now. This occurs in other a small
Hi Elijah - It looks to me like the forceps major had the same problem for
both MNI and CVS in this subject, right? This subject has a relatively
thin and somewhat convoluted forceps major, so you can try increasing the
number of control points, say from 7 to 8. (But I'd try reinitialization
Dear Anastasia,
I have also uploaded the file with the problem (22995_EM.zip), and this is
how my config file looks like after modifications:
set subjlist = (22995)
set pathlist = (fmajor_PP)
set ncpts = (7)
set reinit = (1)
Thanks again!
Best Wishes,
Elijah
--
Elijah Mak
PhD Candidate *|*
Hi Elijah - You add "set reinit =1" to the config file, (and remember to
set the pathlist and subjlist to only what you want to rerun), and then
rerun the -prior and -path steps in that order.
Best,
a.y
On Thu, 18 Aug 2016, Elijah Mak wrote:
Thanks for the tips on reinitialisation of tract
Hi Elijah - It looks like the CVS case needs to be reinitialized. In
principle you're right that if the registration is good this shouldn't be
a problem. It's hard to tell what might've caused this in an individual
case without looking at the data. If you want me to look into it you can
uploa
