Re: [Freesurfer] Surfaces along midline

2018-01-09 Thread Bruce Fischl
Hi Romella usually the left/right split is defined by the aseg, so try fixing it and rerunning the surface generation and see if it resolves your problem cheers Bruce On Fri, 22 Dec 2017, Romella Durrani wrote: > Hi, > I'm having problems with the surfaces along the midline for one scan. I hav

Re: [Freesurfer] Surfaces along midline

2018-01-07 Thread Romella Durrani
Yes the aseg.mgz has many issues towards the anterior regions, specifically on the right side. Would this be fixed by manually editing the putamen aseg, etc.? And would this then subsequently resolve the surface issues? > On Dec 31, 2017, at 3:06 PM, Douglas Greve wrote: > > Did you check the

Re: [Freesurfer] Surfaces along midline

2017-12-31 Thread Douglas Greve
Did you check the aseg.mgz? It looks like the anterior portions of right putamen, caudate, ventricle were not labeled properly. On 12/22/17 1:29 PM, Romella Durrani wrote: Hi, I'm having problems with the surfaces along the midline for one scan. I have attached pictures of the brainmask with